RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 GDF15Q99988 308 aa27.14■■□□□ 1.94
COL9A3-213ENST00000489045 TMEM47Q9BQJ4 181 aa27.14■■□□□ 1.94
COL9A3-213ENST00000489045 PRR12Q9ULL5 1215 aa27.14■■□□□ 1.94
COL9A3-213ENST00000489045 CNPY2Q9Y2B0 182 aa27.14■■□□□ 1.94
COL9A3-213ENST00000489045 RARBP10826 455 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 SNAP25P60880 206 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 LRRC41Q15345 812 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 MAMDC4Q6UXC1 1216 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 RNF41Q9H4P4 317 aaPredicted RBP27.13■■□□□ 1.93
COL9A3-213ENST00000489045 ACAD9Q9H845 621 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 XPNPEP3Q9NQH7 507 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 PCDH10Q9P2E7 1040 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 NEDD4P46934 1319 aa27.13■■□□□ 1.93
COL9A3-213ENST00000489045 A0A1W2PPC1 479 aa27.12■■□□□ 1.93
COL9A3-213ENST00000489045 AKR1A1P14550 325 aa27.12■■□□□ 1.93
COL9A3-213ENST00000489045 CCDC174Q6PII3 467 aa27.12■■□□□ 1.93
COL9A3-213ENST00000489045 ZNF467Q7Z7K2 595 aaPredicted RBP27.12■■□□□ 1.93
COL9A3-213ENST00000489045 FGD4Q96M96 766 aa27.12■■□□□ 1.93
COL9A3-213ENST00000489045 RNF146Q9NTX7 359 aa27.12■■□□□ 1.93
COL9A3-213ENST00000489045 ZNF213O14771 459 aa27.11■■□□□ 1.93
COL9A3-213ENST00000489045 SNAI1O95863 264 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-213ENST00000489045 MAGEA10P43363 369 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-213ENST00000489045 LENG1Q96BZ8 264 aaPredicted RBP27.11■■□□□ 1.93
COL9A3-213ENST00000489045 LCTP09848 1927 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 ALAS1P13196 640 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 GSPT1P15170 499 aaKnown RBP27.1■■□□□ 1.93
COL9A3-213ENST00000489045 BMP8BP34820 402 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 TKFCQ3LXA3 575 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 TTC22Q5TAA0 569 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 TTBK2Q6IQ55 1244 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 ESR2Q92731 530 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 DSCC1Q9BVC3 393 aa27.1■■□□□ 1.93
COL9A3-213ENST00000489045 ZHX1Q9UKY1 873 aaPredicted RBP27.1■■□□□ 1.93
COL9A3-213ENST00000489045 FRMPD2Q68DX3 1309 aaPredicted RBP27.1■■□□□ 1.93
COL9A3-213ENST00000489045 PGK1P00558 417 aa27.09■■□□□ 1.93
COL9A3-213ENST00000489045 SLC16A2P36021 539 aa27.09■■□□□ 1.93
COL9A3-213ENST00000489045 ADCYAP1R1P41586 468 aa27.09■■□□□ 1.93
COL9A3-213ENST00000489045 RTP1P59025 263 aa27.09■■□□□ 1.93
COL9A3-213ENST00000489045 TRERF1Q96PN7 1200 aa27.09■■□□□ 1.93
COL9A3-213ENST00000489045 A1CFQ9NQ94 594 aaKnown RBP27.09■■□□□ 1.93
COL9A3-213ENST00000489045 CDKN2AIPQ9NXV6 580 aaPredicted RBP27.09■■□□□ 1.93
COL9A3-213ENST00000489045 LRRC37A2A6NM11 1700 aa27.09■■□□□ 1.93
COL9A3-213ENST00000489045 LTBP2Q14767 1821 aa27.09■■□□□ 1.93
COL9A3-213ENST00000489045 CNTN2Q02246 1040 aa27.08■■□□□ 1.93
COL9A3-213ENST00000489045 BTNL9Q6UXG8 535 aa27.08■■□□□ 1.93
COL9A3-213ENST00000489045 SLC39A5Q6ZMH5 540 aa27.08■■□□□ 1.93
COL9A3-213ENST00000489045 FERMT2Q96AC1 680 aa27.08■■□□□ 1.93
COL9A3-213ENST00000489045 TTC14Q96N46 770 aa27.08■■□□□ 1.93
COL9A3-213ENST00000489045 IL25Q9H293 177 aa27.08■■□□□ 1.93
COL9A3-213ENST00000489045 RANBP17Q9H2T7 1088 aaKnown RBP27.08■■□□□ 1.93
COL9A3-213ENST00000489045 GPCPD1Q9NPB8 672 aa27.08■■□□□ 1.93
COL9A3-213ENST00000489045 POTEB2H3BUK9 544 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 PDHBP11177 359 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 SYDE2Q5VT97 1194 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 ARMCX2Q7L311 632 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 RNF180Q86T96 592 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 FAM133AQ8N9E0 248 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 ZKSCAN3Q9BRR0 538 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 FAM184BQ9ULE4 1060 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 CCPG1Q9ULG6 757 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 ATP11BQ9Y2G3 1177 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 SZT2Q5T011 3432 aa27.07■■□□□ 1.92
COL9A3-213ENST00000489045 ACVR2BQ13705 512 aa27.06■■□□□ 1.92
COL9A3-213ENST00000489045 MUM1L1Q5H9M0 696 aa27.06■■□□□ 1.92
COL9A3-213ENST00000489045 PHF24Q9UPV7 400 aa27.06■■□□□ 1.92
COL9A3-213ENST00000489045 KDM4AO75164 1064 aa27.05■■□□□ 1.92
COL9A3-213ENST00000489045 ADAMTS4O75173 837 aa27.05■■□□□ 1.92
COL9A3-213ENST00000489045 ICAM1P05362 532 aa27.05■■□□□ 1.92
COL9A3-213ENST00000489045 SNX17Q15036 470 aa27.05■■□□□ 1.92
COL9A3-213ENST00000489045 IMMTQ16891 758 aaKnown RBP27.05■■□□□ 1.92
COL9A3-213ENST00000489045 CCDC144CPQ8IYA2 1237 aa27.05■■□□□ 1.92
COL9A3-213ENST00000489045 ABHD16BQ9H3Z7 469 aa27.05■■□□□ 1.92
COL9A3-213ENST00000489045 SYNRGQ9UMZ2 1314 aa27.05■■□□□ 1.92
COL9A3-213ENST00000489045 NT5C2P49902 561 aa27.04■■□□□ 1.92
COL9A3-213ENST00000489045 MDM2Q00987 491 aaPredicted RBP27.04■■□□□ 1.92
COL9A3-213ENST00000489045 ZNF543Q08ER8 600 aa27.04■■□□□ 1.92
COL9A3-213ENST00000489045 UBE2OQ9C0C9 1292 aaKnown RBP27.04■■□□□ 1.92
COL9A3-213ENST00000489045 CTNNA3Q9UI47 895 aa27.04■■□□□ 1.92
COL9A3-213ENST00000489045 SOWAHBA6NEL2 793 aa27.03■■□□□ 1.92
COL9A3-213ENST00000489045 B4E1Z4 1266 aa27.03■■□□□ 1.92
COL9A3-213ENST00000489045 SNHG28P0DPA3 235 aa27.03■■□□□ 1.92
COL9A3-213ENST00000489045 TRIM60Q495X7 471 aa27.03■■□□□ 1.92
COL9A3-213ENST00000489045 IQCA1Q86XH1 822 aa27.03■■□□□ 1.92
COL9A3-213ENST00000489045 CYP39A1Q9NYL5 469 aa27.03■■□□□ 1.92
COL9A3-213ENST00000489045 LAMA3Q16787 3333 aa27.02■■□□□ 1.92
COL9A3-213ENST00000489045 RAD50Q92878 1312 aa27.02■■□□□ 1.92
COL9A3-213ENST00000489045 SOX1O00570 391 aaPredicted RBP27.02■■□□□ 1.92
COL9A3-213ENST00000489045 ADCY6O43306 1168 aa27.02■■□□□ 1.92
COL9A3-213ENST00000489045 CCDC144BQ3MJ40 725 aa27.02■■□□□ 1.92
COL9A3-213ENST00000489045 DGKHQ86XP1 1220 aa27.02■■□□□ 1.92
COL9A3-213ENST00000489045 KATNBL1Q9H079 304 aa27.02■■□□□ 1.92
COL9A3-213ENST00000489045 PRKAG2Q9UGJ0 569 aa27.02■■□□□ 1.92
COL9A3-213ENST00000489045 ASTN1O14525 1302 aa27.01■■□□□ 1.91
COL9A3-213ENST00000489045 A0A1W2PQ45 241 aaPredicted RBP27.01■■□□□ 1.91
COL9A3-213ENST00000489045 A0A1W2PQY0 241 aa27.01■■□□□ 1.91
COL9A3-213ENST00000489045 DUSP11O75319 330 aaKnown RBP27.01■■□□□ 1.91
COL9A3-213ENST00000489045 NSMFQ6X4W1 530 aa27.01■■□□□ 1.91
COL9A3-213ENST00000489045 TDHQ8IZJ6 230 aa27.01■■□□□ 1.91
COL9A3-213ENST00000489045 ASB14A6NK59 587 aa27■■□□□ 1.91
COL9A3-213ENST00000489045 CCDC178Q5BJE1 867 aa27■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms