RNA–Protein interactions for RNA: ENST00000487890.5

GPNMB-212, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-212ENST00000487890 TRIM39Q9HCM9 518 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 RRP7BPQ9NSQ0 103 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 LRRC4BQ9NT99 713 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 INTS7Q9NVH2 962 aaKnown RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 MAGEC2Q9UBF1 373 aaPredicted RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 TCEAL9Q9UHQ7 104 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 RIPOR2Q9Y4F9 1068 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 DNMT1P26358 1616 aaKnown RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 ABCC3O15438 1527 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 DUOX2Q9NRD8 1548 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 FAM135AQ9P2D6 1515 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 FGD6Q6ZV73 1430 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 MIA2Q96PC5 1412 aa4.46□□□□□ -1.7
GPNMB-212ENST00000487890 ZNF335Q9H4Z2 1342 aaPredicted RBP4.46□□□□□ -1.7
GPNMB-212ENST00000487890 BLACEA4D250 179 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 SPDYE3A6NKU9 549 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 PEX14O75381 377 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 CST3P01034 146 aaPredicted RBP4.45□□□□□ -1.7
GPNMB-212ENST00000487890 TBX4P57082 545 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 STRN3Q13033 797 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 LRRC41Q15345 812 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 SF1Q15637 639 aaKnown RBP4.45□□□□□ -1.7
GPNMB-212ENST00000487890 NFE2Q16621 373 aaPredicted RBP4.45□□□□□ -1.7
GPNMB-212ENST00000487890 CHSY3Q70JA7 882 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 CDC37L1Q7L3B6 337 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 FGD2Q7Z6J4 655 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 MAP4K3Q8IVH8 894 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 BVESQ8NE79 360 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 PPP1R13LQ8WUF5 828 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 CYB5D2Q8WUJ1 264 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 EDARADDQ8WWZ3 215 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 SMARCC1Q92922 1105 aaPredicted RBP4.45□□□□□ -1.7
GPNMB-212ENST00000487890 TMPRSS13Q9BYE2 586 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 MTFR1LQ9H019 292 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP4.45□□□□□ -1.7
GPNMB-212ENST00000487890 SLC52A2Q9HAB3 445 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 NDOR1Q9UHB4 597 aa4.45□□□□□ -1.7
GPNMB-212ENST00000487890 TNPO3Q9Y5L0 923 aaKnown RBP4.45□□□□□ -1.7
GPNMB-212ENST00000487890 UGGT1Q9NYU2 1555 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 PLA2R1Q13018 1463 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 SHANK2Q9UPX8 1470 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 KANK1Q14678 1352 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ANKRD30AQ9BXX3 1397 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP4.44□□□□□ -1.7
GPNMB-212ENST00000487890 MROH1Q8NDA8 1641 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 LOC102724159A0A0B4J2E5 919 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.44□□□□□ -1.7
GPNMB-212ENST00000487890 SHOXO15266 292 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 TPD52L2O43399 206 aaKnown RBP4.44□□□□□ -1.7
GPNMB-212ENST00000487890 DLX3O60479 287 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 PPM1BO75688 479 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 WISP1O95388 367 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 DRD2P14416 443 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 NID1P14543 1247 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 CD247P20963 164 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 CAP2P40123 477 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 AUHQ13825 339 aaKnown RBP4.44□□□□□ -1.7
GPNMB-212ENST00000487890 MAP7Q14244 749 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ZNF460Q14592 562 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 PWP2Q15269 919 aaKnown RBP4.44□□□□□ -1.7
GPNMB-212ENST00000487890 DUOXA2Q1HG44 320 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ANKRD39Q53RE8 183 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 TRIM61Q5EBN2 209 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 NBPF12Q5TAG4 269 aaPredicted RBP4.44□□□□□ -1.7
GPNMB-212ENST00000487890 BRAPQ7Z569 592 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 CCDC146Q8IYE0 955 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 GALNT6Q8NCL4 622 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ADCY4Q8NFM4 1077 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 RIN3Q8TB24 985 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 XAGE3Q8WTP9 111 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 BTN2A2Q8WVV5 523 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 BRF1Q92994 677 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ISL2Q96A47 359 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 VWCEQ96DN2 955 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 SCLYQ96I15 445 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 C8orf48Q96LL4 319 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ASPSCR1Q9BZE9 553 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ATXN3LQ9H3M9 355 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 PRDM6Q9NQX0 595 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 SFMBT1Q9UHJ3 866 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 AKT3Q9Y243 479 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 EMC9Q9Y3B6 208 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ABCC5O15440 1437 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 DAPK1P53355 1430 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 IQGAP1P46940 1657 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 MYO5BQ9ULV0 1848 aa4.44□□□□□ -1.7
GPNMB-212ENST00000487890 ERVK-7P63135 1459 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 NLRP1Q9C000 1473 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 LTBP4Q8N2S1 1624 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 MEGF11A6BM72 1044 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 SHISA8B8ZZ34 492 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 NOP56O00567 594 aaKnown RBP4.43□□□□□ -1.7
GPNMB-212ENST00000487890 TSPAN6O43657 245 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 PRC1O43663 620 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 RNGTTO60942 597 aaKnown RBP4.43□□□□□ -1.7
GPNMB-212ENST00000487890 POU3F2P20265 443 aaPredicted RBP4.43□□□□□ -1.7
GPNMB-212ENST00000487890 NEK4P51957 841 aa4.43□□□□□ -1.7
GPNMB-212ENST00000487890 SRSF11Q05519 484 aaKnown RBP4.43□□□□□ -1.7
GPNMB-212ENST00000487890 SOX4Q06945 474 aaPredicted RBP4.43□□□□□ -1.7
GPNMB-212ENST00000487890 MCL1Q07820 350 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms