RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 PPP1R14AQ96A00 147 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 MRFAP1L1Q96HT8 127 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 FCRL3Q96P31 734 aaPredicted RBP8.12□□□□□ -1.11
USP48-209ENST00000487880 ALPK1Q96QP1 1244 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 NKX2-4Q9H2Z4 354 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 PRDM7Q9NQW5 492 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 MBNL3Q9NUK0 354 aaKnown RBP8.12□□□□□ -1.11
USP48-209ENST00000487880 LRP2BPQ9P2M1 347 aa8.12□□□□□ -1.11
USP48-209ENST00000487880 AURKAO14965 403 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 CD3EP07766 207 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 IFNGR1P15260 489 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 PPP2R2AP63151 447 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 PLCL1Q15111 1095 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 G6PC3Q9BUM1 346 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 SPATA9Q9BWV2 254 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 ARHGEF4Q9NR80 690 aa8.11□□□□□ -1.11
USP48-209ENST00000487880 GPR55Q9Y2T6 319 aaPredicted RBP8.11□□□□□ -1.11
USP48-209ENST00000487880 DNAJC25-GNG10A0A024R161 153 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 FKTNO75072 461 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 VAMP4O75379 141 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 NOP2P46087 812 aaKnown RBP8.1□□□□□ -1.11
USP48-209ENST00000487880 CEBPAP49715 358 aaPredicted RBP8.1□□□□□ -1.11
USP48-209ENST00000487880 GP2P55259 537 aaKnown RBP8.1□□□□□ -1.11
USP48-209ENST00000487880 CYP4F3Q08477 520 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 SSRP1Q08945 709 aaKnown RBP8.1□□□□□ -1.11
USP48-209ENST00000487880 RALGPS1Q5JS13 557 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 RCSD1Q6JBY9 416 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 ABI1Q8IZP0 508 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 BTN2A2Q8WVV5 523 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 LINC01599Q8WXQ3 324 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 CYP26B1Q9NR63 512 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 C19orf73Q9NVV2 129 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 SLAMF8Q9P0V8 285 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 PFDN2Q9UHV9 154 aa8.1□□□□□ -1.11
USP48-209ENST00000487880 SSU72P8A0A1W2PR75 194 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 STXBP3O00186 592 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 SCG5P05408 212 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 RNASE1P07998 156 aaKnown RBP8.09□□□□□ -1.11
USP48-209ENST00000487880 ZGLP1P0C6A0 271 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 GRIA2P42262 883 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 DPY19L1Q2PZI1 675 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 ZNF792Q3KQV3 632 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 ZPBP2Q6X784 338 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 WAPLQ7Z5K2 1190 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 NOP9Q86U38 636 aaKnown RBP8.09□□□□□ -1.11
USP48-209ENST00000487880 LILRB2Q8N423 598 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 PI4K2BQ8TCG2 481 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 COPS5Q92905 334 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 ADAMTS10Q9H324 1103 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 AP5S1Q9NUS5 200 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 ERVK13-1Q9NX77 482 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 EBF1Q9UH73 591 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 TMEM59LQ9UK28 342 aa8.09□□□□□ -1.11
USP48-209ENST00000487880 OAS3Q9Y6K5 1087 aaKnown RBP8.09□□□□□ -1.11
USP48-209ENST00000487880 FGF10O15520 208 aaPredicted RBP8.08□□□□□ -1.12
USP48-209ENST00000487880 GSTM1P09488 218 aa8.08□□□□□ -1.12
USP48-209ENST00000487880 RPL10P27635 214 aaKnown RBP8.08□□□□□ -1.12
USP48-209ENST00000487880 HSP90AA2PQ14568 343 aaPredicted RBP8.08□□□□□ -1.12
USP48-209ENST00000487880 LONRF2Q1L5Z9 754 aa8.08□□□□□ -1.12
USP48-209ENST00000487880 MAP6Q96JE9 813 aa8.08□□□□□ -1.12
USP48-209ENST00000487880 FCRL2Q96LA5 508 aaPredicted RBP8.08□□□□□ -1.12
USP48-209ENST00000487880 AARSD1Q9BTE6 412 aaKnown RBP8.08□□□□□ -1.12
USP48-209ENST00000487880 CDADC1Q9BWV3 514 aa8.08□□□□□ -1.12
USP48-209ENST00000487880 BACE2Q9Y5Z0 518 aa8.08□□□□□ -1.12
USP48-209ENST00000487880 KDM2BQ8NHM5 1336 aa8.07□□□□□ -1.12
USP48-209ENST00000487880 FGFR1P11362 822 aa8.07□□□□□ -1.12
USP48-209ENST00000487880 HOXC12P31275 282 aa8.07□□□□□ -1.12
USP48-209ENST00000487880 GFRA1P56159 465 aa8.07□□□□□ -1.12
USP48-209ENST00000487880 EEF1DP3Q658K8 133 aa8.07□□□□□ -1.12
USP48-209ENST00000487880 CBLL1Q75N03 491 aa8.07□□□□□ -1.12
USP48-209ENST00000487880 ZBTB38Q8NAP3 1195 aaPredicted RBP8.07□□□□□ -1.12
USP48-209ENST00000487880 CCDC120Q96HB5 630 aa8.07□□□□□ -1.12
USP48-209ENST00000487880 C2orf71A6NGG8 1288 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 GDNFP39905 211 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 SCRN1Q12765 414 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 DUSP4Q13115 394 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 SF1Q15637 639 aaKnown RBP8.06□□□□□ -1.12
USP48-209ENST00000487880 C2orf27AQ580R0 203 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 TMEM52Q8NDY8 209 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 THAP3Q8WTV1 239 aaPredicted RBP8.06□□□□□ -1.12
USP48-209ENST00000487880 OSBP2Q969R2 916 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 C1orf159Q96HA4 380 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 CCDC140Q96MF4 163 aa8.06□□□□□ -1.12
USP48-209ENST00000487880 TRAV20A0A0B4J274 112 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 FAM153BP0C7A2 387 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 YOD1Q5VVQ6 348 aaPredicted RBP8.05□□□□□ -1.12
USP48-209ENST00000487880 CYP2R1Q6VVX0 501 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 NPLOC4Q8TAT6 608 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 HHIPL1Q96JK4 782 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 PTCHD1Q96NR3 888 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 IER2Q9BTL4 223 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 SP110Q9HB58 689 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 TNFRSF10DQ9UBN6 386 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 CTNND2Q9UQB3 1225 aa8.05□□□□□ -1.12
USP48-209ENST00000487880 FADS2P1A8MWK0 482 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 DLX3O60479 287 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 CPP00450 1065 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 THBDP07204 575 aa8.04□□□□□ -1.12
USP48-209ENST00000487880 SNRPB2P08579 225 aaKnown RBP8.04□□□□□ -1.12
USP48-209ENST00000487880 PABPC1P11940 636 aaKnown RBP8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms