RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 PPATQ06203 517 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 PTPAQ15257 358 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 TPRNQ4KMQ1 711 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 RILPL1Q5EBL4 403 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 TNFRSF25Q93038 417 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 OPTNQ96CV9 577 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 SLC10A4Q96EP9 437 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 GMCL1Q96IK5 515 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 BRMS1Q9HCU9 246 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 GPCPD1Q9NPB8 672 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 EMILIN3Q9NT22 766 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 DDX19AQ9NUU7 478 aaKnown RBP16.29■□□□□ 0.2
CUX1-209ENST00000487284 PCDHA7Q9UN72 937 aa16.29■□□□□ 0.2
CUX1-209ENST00000487284 IRF6O14896 467 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 BMP3P12645 472 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 CALML3P27482 149 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 MRE11P49959 708 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 TOB1P50616 345 aaPredicted RBP16.28■□□□□ 0.2
CUX1-209ENST00000487284 HMGCS2P54868 508 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 HUNKP57058 714 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 SF3A1Q15459 793 aaKnown RBP16.28■□□□□ 0.2
CUX1-209ENST00000487284 ADALQ6DHV7 355 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 TTBK2Q6IQ55 1244 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 RIOX1Q9H6W3 641 aa16.28■□□□□ 0.2
CUX1-209ENST00000487284 PPP6R2O75170 966 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 GJA5P36382 358 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 USP14P54578 494 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 PPIL2Q13356 520 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 FAM83BQ5T0W9 1011 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 GPATCH4Q5T3I0 446 aaKnown RBP16.27■□□□□ 0.2
CUX1-209ENST00000487284 LPAR1Q92633 364 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 UBA5Q9GZZ9 404 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 GRPEL1Q9HAV7 217 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 DACT1Q9NYF0 836 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 LOC285556D6RIA3 1793 aa16.27■□□□□ 0.2
CUX1-209ENST00000487284 NLRP5P59047 1200 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 WWC2Q6AWC2 1192 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 CCAR1Q8IX12 1150 aaKnown RBP16.26■□□□□ 0.19
CUX1-209ENST00000487284 CCDC148Q8NFR7 591 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 PIBF1Q8WXW3 757 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 GPKOWQ92917 476 aaPredicted RBP eCLIP16.26■□□□□ 0.19
CUX1-209ENST00000487284 NUP62CLQ9H1M0 184 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.26■□□□□ 0.19
CUX1-209ENST00000487284 BARHL2Q9NY43 387 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 MORC2Q9Y6X9 1032 aaPredicted RBP16.26■□□□□ 0.19
CUX1-209ENST00000487284 C19orf81C9J6K1 198 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 TMEM232C9JQI7 657 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 STXBP3O00186 592 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 WDR46O15213 610 aaKnown RBP16.26■□□□□ 0.19
CUX1-209ENST00000487284 NR1I2O75469 434 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 VCAM1P19320 739 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 SLC16A2P36021 539 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 FSTL1Q12841 308 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 SH3D19Q5HYK7 790 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 AXDND1Q5T1B0 1012 aaPredicted RBP16.26■□□□□ 0.19
CUX1-209ENST00000487284 GALNT17Q6IS24 598 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 CCDC73Q6ZRK6 1079 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 SAPCD2Q86UD0 394 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 JMYQ8N9B5 988 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 DAGLBQ8NCG7 672 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 RRP36Q96EU6 259 aaKnown RBP16.26■□□□□ 0.19
CUX1-209ENST00000487284 C12orf42Q96LP6 360 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 GOLPH3LQ9H4A5 285 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 CLSTN2Q9H4D0 955 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 KCNH4Q9UQ05 1017 aa16.26■□□□□ 0.19
CUX1-209ENST00000487284 PARP14Q460N5 1801 aa16.25■□□□□ 0.19
CUX1-209ENST00000487284 hCG_1984214I3L0E3 225 aa16.25■□□□□ 0.19
CUX1-209ENST00000487284 FAM160A1Q05DH4 1040 aa16.25■□□□□ 0.19
CUX1-209ENST00000487284 TYW1BQ6NUM6 668 aa16.25■□□□□ 0.19
CUX1-209ENST00000487284 ZNF713Q8N859 430 aaPredicted RBP16.25■□□□□ 0.19
CUX1-209ENST00000487284 ENGASEQ8NFI3 743 aa16.25■□□□□ 0.19
CUX1-209ENST00000487284 MRPS27Q92552 414 aaKnown RBP16.25■□□□□ 0.19
CUX1-209ENST00000487284 WNK4Q96J92 1243 aa16.25■□□□□ 0.19
CUX1-209ENST00000487284 A0A0G2JLL6 359 aaPredicted RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 FAM205CA6NFA0 338 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 CXCL11O14625 94 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 MKRN3Q13064 507 aaKnown RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 IKQ13123 557 aaPredicted RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 EARS2Q5JPH6 523 aaKnown RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 RBM43Q6ZSC3 357 aaKnown RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 HEATR3Q7Z4Q2 680 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 PRRT2Q7Z6L0 340 aaPredicted RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 BLIDQ8IZY5 108 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 FSIP1Q8NA03 581 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 RPAP3Q9H6T3 665 aaPredicted RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 VAT1LQ9HCJ6 419 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 FBXO28Q9NVF7 368 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 TMOD4Q9NZQ9 345 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 SEC63Q9UGP8 760 aaKnown RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 NOL7Q9UMY1 257 aaKnown RBP16.24■□□□□ 0.19
CUX1-209ENST00000487284 PCDHA4Q9UN74 947 aa16.24■□□□□ 0.19
CUX1-209ENST00000487284 M0R2N6 131 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 XRCC6P12956 609 aaKnown RBP eCLIP16.23■□□□□ 0.19
CUX1-209ENST00000487284 STAT2P52630 851 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 SNW1Q13573 536 aaKnown RBP16.23■□□□□ 0.19
CUX1-209ENST00000487284 BTNL9Q6UXG8 535 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 HOMER1Q86YM7 354 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 ADGRF4Q8IZF3 695 aa16.23■□□□□ 0.19
CUX1-209ENST00000487284 CCDC12Q8WUD4 166 aaPredicted RBP16.23■□□□□ 0.19
CUX1-209ENST00000487284 PIGSQ96S52 555 aa16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms