RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 CHST13Q8NET6 341 aa19.93■□□□□ 0.78
VIM-205ENST00000485947 MAML3Q96JK9 1138 aa19.93■□□□□ 0.78
VIM-205ENST00000485947 DDX20Q9UHI6 824 aaKnown RBP19.93■□□□□ 0.78
VIM-205ENST00000485947 LAMA3Q16787 3333 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 ZNF213O14771 459 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 ST18O60284 1047 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 TOP1P11387 765 aaKnown RBP19.92■□□□□ 0.78
VIM-205ENST00000485947 CYP2C19P33261 490 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 BECN1Q14457 450 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 SNRNP48Q6IEG0 339 aaKnown RBP19.92■□□□□ 0.78
VIM-205ENST00000485947 DCAF4Q8WV16 495 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 SNX21Q969T3 373 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 KIFC2Q96AC6 838 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 C11orf49Q9H6J7 331 aa19.92■□□□□ 0.78
VIM-205ENST00000485947 RBM27Q9P2N5 1060 aaKnown RBP19.92■□□□□ 0.78
VIM-205ENST00000485947 TMEM232C9JQI7 657 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 SEPT4O43236 478 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 EVI5O60447 810 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 MNX1P50219 401 aaPredicted RBP19.91■□□□□ 0.78
VIM-205ENST00000485947 ZNF792Q3KQV3 632 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 TKFCQ3LXA3 575 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 ESR2Q92731 530 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 TOMM22Q9NS69 142 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 PNMA2Q9UL42 364 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 MYH4Q9Y623 1939 aa19.91■□□□□ 0.78
VIM-205ENST00000485947 HMGB1P09429 215 aaKnown RBP19.9■□□□□ 0.78
VIM-205ENST00000485947 COL6A1P12109 1028 aa19.9■□□□□ 0.78
VIM-205ENST00000485947 ZNF467Q7Z7K2 595 aaPredicted RBP19.9■□□□□ 0.78
VIM-205ENST00000485947 ARRDC4Q8NCT1 418 aa19.9■□□□□ 0.78
VIM-205ENST00000485947 JAKMIP1Q96N16 626 aaKnown RBP19.9■□□□□ 0.78
VIM-205ENST00000485947 ZSWIM6Q9HCJ5 1215 aa19.9■□□□□ 0.78
VIM-205ENST00000485947 INCENPQ9NQS7 918 aa19.9■□□□□ 0.78
VIM-205ENST00000485947 CASTP20810 708 aaKnown RBP19.89■□□□□ 0.77
VIM-205ENST00000485947 ADCK5Q3MIX3 580 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 DGKHQ86XP1 1220 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 CPXCR1Q8N123 301 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 DDX11Q96FC9 970 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 IPO9Q96P70 1041 aaKnown RBP19.89■□□□□ 0.77
VIM-205ENST00000485947 NEK1Q96PY6 1258 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 TINF2Q9BSI4 451 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 PRO3102Q9H379 93 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 TACC3Q9Y6A5 838 aa19.89■□□□□ 0.77
VIM-205ENST00000485947 SYNGAP1Q96PV0 1343 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 DNAJC25-GNG10A0A024R161 153 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 E7EWF7 191 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 DNM1LO00429 736 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 NMT2O60551 498 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 CNGA1P29973 690 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 MCM2P49736 904 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 NEK4P51957 841 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 RRP12Q5JTH9 1297 aaKnown RBP19.88■□□□□ 0.77
VIM-205ENST00000485947 BLOC1S2Q6QNY1 142 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 MAMDC4Q6UXC1 1216 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 BTNL9Q6UXG8 535 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 HSCBQ8IWL3 235 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 DIS3LQ8TF46 1054 aaKnown RBP19.88■□□□□ 0.77
VIM-205ENST00000485947 TMEM47Q9BQJ4 181 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 CYP46A1Q9Y6A2 500 aa19.88■□□□□ 0.77
VIM-205ENST00000485947 HAND2P61296 217 aa19.87■□□□□ 0.77
VIM-205ENST00000485947 IKQ13123 557 aaPredicted RBP19.87■□□□□ 0.77
VIM-205ENST00000485947 RUFY3Q7L099 469 aa19.87■□□□□ 0.77
VIM-205ENST00000485947 IQCA1Q86XH1 822 aa19.87■□□□□ 0.77
VIM-205ENST00000485947 TRPV1Q8NER1 839 aa19.87■□□□□ 0.77
VIM-205ENST00000485947 CNNM2Q9H8M5 875 aa19.87■□□□□ 0.77
VIM-205ENST00000485947 RAVER2Q9HCJ3 691 aaKnown RBP19.87■□□□□ 0.77
VIM-205ENST00000485947 RIPK3Q9Y572 518 aa19.87■□□□□ 0.77
VIM-205ENST00000485947 COL11A1P12107 1806 aaPredicted RBP19.87■□□□□ 0.77
VIM-205ENST00000485947 PGK2P07205 417 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 STOX1Q6ZVD7 989 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 TBC1D10CQ8IV04 446 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 ANKRD35Q8N283 1001 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 NCOA7Q8NI08 942 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 ANKS1AQ92625 1134 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 UPF3BQ9BZI7 483 aaKnown RBP19.86■□□□□ 0.77
VIM-205ENST00000485947 KRT23Q9C075 422 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 ACAD9Q9H845 621 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 ISY1Q9ULR0 285 aaKnown RBP19.86■□□□□ 0.77
VIM-205ENST00000485947 CNPY2Q9Y2B0 182 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 TAF6LQ9Y6J9 622 aa19.86■□□□□ 0.77
VIM-205ENST00000485947 RPS6KB1P23443 525 aa19.85■□□□□ 0.77
VIM-205ENST00000485947 TRDNQ13061 729 aa19.85■□□□□ 0.77
VIM-205ENST00000485947 ALDH8A1Q9H2A2 487 aaPredicted RBP19.85■□□□□ 0.77
VIM-205ENST00000485947 PRR12Q9ULL5 1215 aa19.85■□□□□ 0.77
VIM-205ENST00000485947 PFASO15067 1338 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 WDR19Q8NEZ3 1342 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 A0A1W2PPC1 479 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 SNHG28P0DPA3 235 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 CCDC96Q2M329 555 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 GPATCH4Q5T3I0 446 aaKnown RBP19.84■□□□□ 0.77
VIM-205ENST00000485947 KCTD1Q719H9 257 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 RALYLQ86SE5 291 aaKnown RBP19.84■□□□□ 0.77
VIM-205ENST00000485947 MAF1Q9H063 256 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 PDRG1Q9NUG6 133 aa19.84■□□□□ 0.77
VIM-205ENST00000485947 ZNF536O15090 1300 aa19.83■□□□□ 0.77
VIM-205ENST00000485947 ICAM1P05362 532 aa19.83■□□□□ 0.77
VIM-205ENST00000485947 PDHBP11177 359 aa19.83■□□□□ 0.77
VIM-205ENST00000485947 AKR1A1P14550 325 aa19.83■□□□□ 0.77
VIM-205ENST00000485947 DHX32Q7L7V1 743 aaKnown RBP19.83■□□□□ 0.77
VIM-205ENST00000485947 RANBP17Q9H2T7 1088 aaKnown RBP19.83■□□□□ 0.77
VIM-205ENST00000485947 DAXXQ9UER7 740 aaPredicted RBP19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms