RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 STX6O43752 255 aa20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 ANKRD23Q86SG2 305 aa20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 ATG4CQ96DT6 458 aa20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 SH3GLB2Q9NR46 395 aa20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 BARHL2Q9NY43 387 aa20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 HOXC10Q9NYD6 342 aa20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 PNMA3Q9UL41 463 aa20.45■□□□□ 0.86
SMARCD3-212ENST00000485610 H3BQV1 296 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 OSBPP22059 807 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 SNAP25P60880 206 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 TRAF1Q13077 416 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 IFFO2Q5TF58 517 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 PPP1R18Q6NYC8 613 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 PAXIP1Q6ZW49 1069 aaPredicted RBP20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 CCDC148Q8NFR7 591 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 AMNQ9BXJ7 453 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 ASCC2Q9H1I8 757 aaPredicted RBP20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 SLC38A10Q9HBR0 1119 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 VPS54Q9P1Q0 977 aa20.44■□□□□ 0.86
SMARCD3-212ENST00000485610 TESPA1A2RU30 521 aaPredicted RBP20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 VPS37CA5D8V6 355 aaPredicted RBP20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 RASSF10A6NK89 507 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 BTBD19C9JJ37 291 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 STXBP3O00186 592 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 VWA5AO00534 786 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 PPP1R11O60927 126 aaPredicted RBP20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 ZBED4O75132 1171 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 FBXO11Q86XK2 927 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 FBXO18Q8NFZ0 1043 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 CCDC12Q8WUD4 166 aaPredicted RBP20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 CHMP5Q9NZZ3 219 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 PNMA2Q9UL42 364 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 ADAMTS5Q9UNA0 930 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 CTDP1Q9Y5B0 961 aaPredicted RBP20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 NAPAP54920 295 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 NUCB2P80303 420 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 KRT40Q6A162 431 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 CCDC174Q6PII3 467 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 LBX2Q6XYB7 198 aa20.43■□□□□ 0.86
SMARCD3-212ENST00000485610 WDR33Q9C0J8 1336 aaKnown RBP20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 PDHXO00330 501 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 HERVK_113P62684 666 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 GUCY1B3Q02153 619 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 DEFB115Q30KQ5 88 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 OTUD7BQ6GQQ9 843 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 CYP4F22Q6NT55 531 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 MB21D1Q8N884 522 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 SHISA4Q96DD7 197 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 GJB4Q9NTQ9 266 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 MTMR6Q9Y217 621 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 PCDHA1Q9Y5I3 950 aa20.42■□□□□ 0.86
SMARCD3-212ENST00000485610 ESYT2A0FGR8 921 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 ICAM1P05362 532 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 CALML3P27482 149 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 OAZ1P54368 228 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 INHBEP58166 350 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 SREBF2Q12772 1141 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 PKP1Q13835 747 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 TYW1BQ6NUM6 668 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 REPS2Q8NFH8 660 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 GTF3C2Q8WUA4 911 aaPredicted RBP20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 COA7Q96BR5 231 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 P2RX7Q99572 595 aaKnown RBP20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 PHF20Q9BVI0 1012 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 ZCCHC17Q9NP64 241 aaKnown RBP20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 THSD7BQ9C0I4 1608 aa20.41■□□□□ 0.86
SMARCD3-212ENST00000485610 ZNF536O15090 1300 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 MMP1P03956 469 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 NOGQ13253 232 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 USH1GQ495M9 461 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 FAM43AQ8N2R8 423 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 CAPNS2Q96L46 248 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 CCPG1Q9ULG6 757 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 KCNJ14Q9UNX9 436 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 ABCB11O95342 1321 aa20.4■□□□□ 0.86
SMARCD3-212ENST00000485610 TCHHQ07283 1943 aa20.39■□□□□ 0.86
SMARCD3-212ENST00000485610 BRD1O95696 1058 aa20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 ZSCAN22P10073 491 aaPredicted RBP20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 NLRP5P59047 1200 aa20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 GRM1Q13255 1194 aa20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 SAFBQ15424 915 aaKnown RBP eCLIP20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 CPXCR1Q8N123 301 aa20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 PARK7Q99497 189 aaKnown RBP20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 PTPN18Q99952 460 aa20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 BRMS1Q9HCU9 246 aa20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 ZNF214Q9UL59 606 aaPredicted RBP20.39■□□□□ 0.85
SMARCD3-212ENST00000485610 ATP2A1O14983 1001 aa20.38■□□□□ 0.85
SMARCD3-212ENST00000485610 GALNT17Q6IS24 598 aa20.38■□□□□ 0.85
SMARCD3-212ENST00000485610 TEX13BQ9BXU2 312 aa20.38■□□□□ 0.85
SMARCD3-212ENST00000485610 ZMYND12Q9H0C1 365 aa20.38■□□□□ 0.85
SMARCD3-212ENST00000485610 RAVER2Q9HCJ3 691 aaKnown RBP20.38■□□□□ 0.85
SMARCD3-212ENST00000485610 IGF2BP3O00425 579 aaKnown RBP eCLIP20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 GNA11P29992 359 aa20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 ADCY7P51828 1080 aa20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 TMEM132BQ14DG7 1078 aa20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 DAGLBQ8NCG7 672 aa20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 SMCR8Q8TEV9 937 aaPredicted RBP20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 AGBL1Q96MI9 1066 aa20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 GLT8D2Q9H1C3 349 aa20.37■□□□□ 0.85
SMARCD3-212ENST00000485610 C6orf50Q9HD87 102 aa20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms