RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 EIF4ENIF1Q9NRA8 985 aaKnown RBP6.25□□□□□ -1.41
COL17A1-206ENST00000483876 IL17RBQ9NRM6 502 aa6.25□□□□□ -1.41
COL17A1-206ENST00000483876 IGSF5Q9NSI5 407 aa6.25□□□□□ -1.41
COL17A1-206ENST00000483876 USP40Q9NVE5 1235 aa6.25□□□□□ -1.41
COL17A1-206ENST00000483876 TMEM63CQ9P1W3 806 aa6.25□□□□□ -1.41
COL17A1-206ENST00000483876 TFIP11Q9UBB9 837 aaKnown RBP6.25□□□□□ -1.41
COL17A1-206ENST00000483876 JAG2Q9Y219 1238 aa6.25□□□□□ -1.41
COL17A1-206ENST00000483876 ALPK3Q96L96 1907 aa6.25□□□□□ -1.41
COL17A1-206ENST00000483876 FLT1P17948 1338 aa6.25□□□□□ -1.41
COL17A1-206ENST00000483876 CCL15-CCL14A0A0B4J2E2 113 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 UNCXA6NJT0 531 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 FIBPO43427 364 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 PPP1R12BO60237 982 aaPredicted RBP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 PRDM1O75626 825 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 CAVIN2O95810 425 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 MMP1P03956 469 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 CYP2D6P10635 497 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 CRKP46108 304 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 COL9A2Q14055 689 aaPredicted RBP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 SLC39A14Q15043 492 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 SHHQ15465 462 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 CCDC85BQ15834 202 aaPredicted RBP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 CCL15Q16663 113 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 RILPL1Q5EBL4 403 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 FKBP1CQ5VVH2 108 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 MYSM1Q5VVJ2 828 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 ADALQ6DHV7 355 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 GALNT17Q6IS24 598 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 CDC42EP5Q6NZY7 148 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 TMTC3Q6ZXV5 915 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 METTL16Q86W50 562 aaKnown RBP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 MAPKAPK5Q8IW41 473 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 LINC00301Q8NCQ3 95 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 NUP133Q8WUM0 1156 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 BRI3BPQ8WY22 251 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 KHSRPQ92945 711 aaKnown RBP eCLIP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 PHKBQ93100 1093 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 CHAMP1Q96JM3 812 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 MS4A4AQ96JQ5 239 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 GAS2L1Q99501 681 aaPredicted RBP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 SLC26A6Q9BXS9 759 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 GDPD2Q9HCC8 539 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 DDX19AQ9NUU7 478 aaKnown RBP6.24□□□□□ -1.41
COL17A1-206ENST00000483876 SERPINB13Q9UIV8 391 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 MYH2Q9UKX2 1941 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 ADGRA2Q96PE1 1338 aa6.24□□□□□ -1.41
COL17A1-206ENST00000483876 ZSWIM8A7E2V4 1837 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PLIN4Q96Q06 1357 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 IGKV6D-41A0A0C4DH26 115 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PALM3A6NDB9 673 aaPredicted RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PI4K2BG5E9Z4 385 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 CTAGE5O15320 804 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 ADCY3O60266 1144 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PPP6R2O75170 966 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 ENTPD3O75355 529 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 INHAP05111 366 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 HLA-DOAP06340 250 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 TOP1P11387 765 aaKnown RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 XRCC6P12956 609 aaKnown RBP eCLIP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PRKCZQ05513 592 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 GRM4Q14833 912 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PKN1Q16512 942 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 AAK1Q2M2I8 961 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 UVSSAQ2YD98 709 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 FOXD4L6Q3SYB3 417 aaPredicted RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 FAM47AQ5JRC9 791 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 ANO1Q5XXA6 986 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 FAM173BQ6P4H8 233 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 RSBN1LQ6PCB5 846 aaPredicted RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 FOXD4L3Q6VB84 417 aaPredicted RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 RBM43Q6ZSC3 357 aaKnown RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 GAS2L3Q86XJ1 694 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 NOSTRINQ8IVI9 506 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 MTMR14Q8NCE2 650 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PNMA1Q8ND90 353 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 MKL1Q969V6 931 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 DYNLL2Q96FJ2 89 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PGBD1Q96JS3 809 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 USP28Q96RU2 1077 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 GMLQ99445 158 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PHOX2BQ99453 314 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 TMEM47Q9BQJ4 181 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 MYL10Q9BUA6 226 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 OSBPL5Q9H0X9 879 aaPredicted RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 TSPYL2Q9H2G4 693 aaPredicted RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 GRPEL1Q9HAV7 217 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 PI4KBQ9UBF8 816 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 SYNPO2Q9UMS6 1093 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 V9GY48 417 aaPredicted RBP6.23□□□□□ -1.41
COL17A1-206ENST00000483876 TCHHQ07283 1943 aa6.23□□□□□ -1.41
COL17A1-206ENST00000483876 FAM237AA0A1B0GTK4 181 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 SPTLC2O15270 562 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 BMP15O95972 392 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 RXRAP19793 462 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 CMA1P23946 247 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 CALML3P27482 149 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 TRAPPC10P48553 1259 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 GTF2A2P52657 109 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 PFKFB3Q16875 520 aaPredicted RBP6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms