RNA–Protein interactions for RNA: ENST00000481991.1

USP54-213, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 403 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-213ENST00000481991 HOMER2Q9NSB8 354 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 PPP1R9AQ9ULJ8 1098 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 RIPK3Q9Y572 518 aa9.29□□□□□ -0.92
USP54-213ENST00000481991 PRRC2BQ5JSZ5 2229 aaKnown RBP9.28□□□□□ -0.92
USP54-213ENST00000481991 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.28□□□□□ -0.92
USP54-213ENST00000481991 ADCY6O43306 1168 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 CABYRO75952 493 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 POU3F3P20264 500 aaPredicted RBP9.28□□□□□ -0.92
USP54-213ENST00000481991 TAP1Q03518 808 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 FSCN1Q16658 493 aaKnown RBP9.28□□□□□ -0.92
USP54-213ENST00000481991 SLC9C2Q5TAH2 1124 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 ARMCX2Q7L311 632 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 EEPD1Q7L9B9 569 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 AMOTL1Q8IY63 956 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 CCDC144CPQ8IYA2 1237 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 CHMP4CQ96CF2 233 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 NUP88Q99567 741 aaPredicted RBP9.28□□□□□ -0.92
USP54-213ENST00000481991 TEX13BQ9BXU2 312 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 UPF3AQ9H1J1 476 aaKnown RBP9.28□□□□□ -0.92
USP54-213ENST00000481991 WNT8AQ9H1J5 351 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 GPHNQ9NQX3 736 aaPredicted RBP9.28□□□□□ -0.92
USP54-213ENST00000481991 SWAP70Q9UH65 585 aa9.28□□□□□ -0.92
USP54-213ENST00000481991 MYH1P12882 1939 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 SUPT20HL2P0C7V6 817 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 PTGS1P23219 599 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 KCNJ6P48051 423 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 CNTN2Q02246 1040 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 GABPAQ06546 454 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 PTCRAQ6ISU1 281 aaPredicted RBP9.27□□□□□ -0.93
USP54-213ENST00000481991 MAMDC4Q6UXC1 1216 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 TLK2Q86UE8 772 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 HERC6Q8IVU3 1022 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 FAM178BQ8IXR5 827 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 GDPD5Q8WTR4 605 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 PPP1R13LQ8WUF5 828 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 FRAT1Q92837 279 aaPredicted RBP9.27□□□□□ -0.93
USP54-213ENST00000481991 CCDC17Q96LX7 622 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 SLF1Q9BQI6 1058 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 TRMT13Q9NUP7 481 aaKnown RBP9.27□□□□□ -0.93
USP54-213ENST00000481991 TLR7Q9NYK1 1049 aaKnown RBP9.27□□□□□ -0.93
USP54-213ENST00000481991 ZNF214Q9UL59 606 aaPredicted RBP9.27□□□□□ -0.93
USP54-213ENST00000481991 ADAMTS5Q9UNA0 930 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 BDP1A6H8Y1 2624 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 ZNF536O15090 1300 aa9.27□□□□□ -0.93
USP54-213ENST00000481991 MUC6Q6W4X9 2439 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 CYP2D7A0A087X1C5 515 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 ARHGEF15O94989 841 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 PFKMP08237 780 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 MYL3P08590 195 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 IL9P15248 144 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 CDK8P49336 464 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 SLFN5Q08AF3 891 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 MTX1Q13505 466 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 SPRED2Q7Z698 418 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 TMCO2Q7Z6W1 182 aaPredicted RBP9.26□□□□□ -0.93
USP54-213ENST00000481991 PHOSPHO2Q8TCD6 241 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 CLUAP1Q96AJ1 413 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 DDRGK1Q96HY6 314 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 ZNF512BQ96KM6 892 aaPredicted RBP9.26□□□□□ -0.93
USP54-213ENST00000481991 AGBL1Q96MI9 1066 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 SLC9A7Q96T83 725 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 UBE2ZQ9H832 354 aaPredicted RBP9.26□□□□□ -0.93
USP54-213ENST00000481991 ARMT1Q9H993 441 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 KANSL2Q9H9L4 492 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 GPR108Q9NPR9 543 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 NOD1Q9Y239 953 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 GRIN2DO15399 1336 aa9.26□□□□□ -0.93
USP54-213ENST00000481991 DNAJC25-GNG10A0A024R161 153 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 CTAGE5O15320 804 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 DCXO43602 365 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 PRKAB2O43741 272 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 IGSF3O75054 1194 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 IKQ13123 557 aaPredicted RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 FAM117BQ6P1L5 589 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 KIAA1211Q6ZU35 1233 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 ZNF467Q7Z7K2 595 aaPredicted RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 PRPF38AQ8NAV1 312 aaKnown RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 SLC43A3Q8NBI5 491 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 GADD45GIP1Q8TAE8 222 aaPredicted RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 ANKS1AQ92625 1134 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 MFSD14AQ96MC6 490 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 PHOX2BQ99453 314 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 RIOK1Q9BRS2 568 aaKnown RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 ALDH8A1Q9H2A2 487 aaPredicted RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 DCP1AQ9NPI6 582 aaPredicted RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 PDGFCQ9NRA1 345 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 DBNLQ9UJU6 430 aaKnown RBP9.25□□□□□ -0.93
USP54-213ENST00000481991 COG6Q9Y2V7 657 aa9.25□□□□□ -0.93
USP54-213ENST00000481991 ZNF236Q9UL36 1845 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 GBF1Q92538 1859 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 LCHNA4D1U4 455 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 USP17L12C9JPN9 530 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 USP17L21D6R901 530 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 H3BQ06 376 aaPredicted RBP9.24□□□□□ -0.93
USP54-213ENST00000481991 SMPD1P17405 629 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 TTF1Q15361 905 aaPredicted RBP9.24□□□□□ -0.93
USP54-213ENST00000481991 IQSEC1Q6DN90 963 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 LCORLQ8N3X6 602 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 REPS2Q8NFH8 660 aa9.24□□□□□ -0.93
USP54-213ENST00000481991 EAF2Q96CJ1 260 aaPredicted RBP9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms