RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 GPR162Q16538 588 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 MISP3Q96FF7 219 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 TCF12Q99081 682 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 USP26Q9BXU7 913 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 NIF3L1Q9GZT8 377 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 DNAJC25Q9H1X3 360 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 NUDCQ9Y266 331 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 DLEC1Q9Y238 1755 aa8.14□□□□□ -1.11
VPS50-215ENST00000480943 GNAT3A8MTJ3 354 aa8.13□□□□□ -1.11
VPS50-215ENST00000480943 EIF1AYO14602 144 aaKnown RBP8.13□□□□□ -1.11
VPS50-215ENST00000480943 RPS6KA4O75676 772 aa8.13□□□□□ -1.11
VPS50-215ENST00000480943 U2AF1L5P0DN76 240 aaPredicted RBP8.13□□□□□ -1.11
VPS50-215ENST00000480943 GRIA4P48058 902 aa8.13□□□□□ -1.11
VPS50-215ENST00000480943 USP11P51784 963 aa8.13□□□□□ -1.11
VPS50-215ENST00000480943 U2AF1Q01081 240 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS50-215ENST00000480943 KIAA0319Q5VV43 1072 aa8.13□□□□□ -1.11
VPS50-215ENST00000480943 EHD4Q9H223 541 aa8.13□□□□□ -1.11
VPS50-215ENST00000480943 LRRC4CQ9HCJ2 640 aa8.13□□□□□ -1.11
VPS50-215ENST00000480943 NRXN2Q9P2S2 1712 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 MMP10P09238 476 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 GSTM4Q03013 218 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 PCDH1Q08174 1060 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 TEFQ10587 303 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 DNAJC10Q8IXB1 793 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 TTC5Q8N0Z6 440 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 C12orf50Q8NA57 414 aaPredicted RBP8.12□□□□□ -1.11
VPS50-215ENST00000480943 ALKBH8Q96BT7 664 aaKnown RBP8.12□□□□□ -1.11
VPS50-215ENST00000480943 PHACTR3Q96KR7 559 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 CLEC4MQ9H2X3 399 aaPredicted RBP8.12□□□□□ -1.11
VPS50-215ENST00000480943 CYP4F12Q9HCS2 524 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 DCTN4Q9UJW0 460 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 CCDC88AQ3V6T2 1871 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 ANKRD31Q8N7Z5 1873 aa8.12□□□□□ -1.11
VPS50-215ENST00000480943 EIF4EBP3O60516 100 aaPredicted RBP8.11□□□□□ -1.11
VPS50-215ENST00000480943 GYS1P13807 737 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 RFC4P35249 363 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 SPRED3Q2MJR0 410 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 CCDC74AQ96AQ1 378 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 WWC3Q9ULE0 1092 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 CD2APQ9Y5K6 639 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 PXDNLA1KZ92 1463 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 C10orf71Q711Q0 1435 aa8.11□□□□□ -1.11
VPS50-215ENST00000480943 COL15A1P39059 1388 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 CEMIPQ8WUJ3 1361 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 LOC100289279A0A1B0GTE1 492 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 TMC7Q7Z402 723 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 IL17REQ8NFR9 667 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 PRKAG2Q9UGJ0 569 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 SRP68Q9UHB9 627 aaKnown RBP8.1□□□□□ -1.11
VPS50-215ENST00000480943 NUP98P52948 1817 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 HEG1Q9ULI3 1381 aa8.1□□□□□ -1.11
VPS50-215ENST00000480943 COL11A2P13942 1736 aaPredicted RBP8.09□□□□□ -1.11
VPS50-215ENST00000480943 SOS1Q07889 1333 aaPredicted RBP8.09□□□□□ -1.11
VPS50-215ENST00000480943 USP42Q9H9J4 1324 aaKnown RBP8.09□□□□□ -1.11
VPS50-215ENST00000480943 SBF1O95248 1867 aa8.09□□□□□ -1.11
VPS50-215ENST00000480943 GADD45BO75293 160 aaPredicted RBP8.09□□□□□ -1.11
VPS50-215ENST00000480943 CYP19A1P11511 503 aaPredicted RBP8.09□□□□□ -1.11
VPS50-215ENST00000480943 FUT4P22083 530 aa8.09□□□□□ -1.11
VPS50-215ENST00000480943 MAPK1P28482 360 aa8.09□□□□□ -1.11
VPS50-215ENST00000480943 DDX10Q13206 875 aaKnown RBP8.09□□□□□ -1.11
VPS50-215ENST00000480943 ZNF574Q6ZN55 896 aaPredicted RBP8.09□□□□□ -1.11
VPS50-215ENST00000480943 SHISA5Q8N114 240 aa8.09□□□□□ -1.11
VPS50-215ENST00000480943 NLGN1Q8N2Q7 840 aa8.09□□□□□ -1.11
VPS50-215ENST00000480943 ZBTB1Q9Y2K1 713 aa8.09□□□□□ -1.11
VPS50-215ENST00000480943 ARFGEF2Q9Y6D5 1785 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 FAM170BA6NMN3 283 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 INHBBP09529 407 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 CANXP27824 592 aaKnown RBP8.08□□□□□ -1.12
VPS50-215ENST00000480943 ADMP35318 185 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 KCNA1Q09470 495 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 DCTN1Q14203 1278 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 ZNF423Q2M1K9 1284 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 ZNF790Q6PG37 636 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 MCM10Q7L590 875 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 SMG8Q8ND04 991 aaKnown RBP8.08□□□□□ -1.12
VPS50-215ENST00000480943 RTF1Q92541 710 aaKnown RBP8.08□□□□□ -1.12
VPS50-215ENST00000480943 ZNF496Q96IT1 587 aaPredicted RBP8.08□□□□□ -1.12
VPS50-215ENST00000480943 TMPRSS13Q9BYE2 586 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 ZNF576Q9H609 170 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 SUGCTQ9HAC7 445 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 IVNS1ABPQ9Y6Y0 642 aa8.08□□□□□ -1.12
VPS50-215ENST00000480943 KCNQ3O43525 872 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 GRIN3BO60391 1043 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 DLGAP3O95886 979 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 NEFMP07197 916 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 ITPKAP23677 461 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 DDR1Q08345 913 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 MLANAQ16655 118 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 PRPF40BQ6NWY9 871 aaKnown RBP8.07□□□□□ -1.12
VPS50-215ENST00000480943 NRSN2Q9GZP1 204 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 ABCB6Q9NP58 842 aa8.07□□□□□ -1.12
VPS50-215ENST00000480943 TIAM2Q8IVF5 1701 aa8.06□□□□□ -1.12
VPS50-215ENST00000480943 MAPK8IP3Q9UPT6 1336 aa8.06□□□□□ -1.12
VPS50-215ENST00000480943 B3GALT4O96024 378 aa8.06□□□□□ -1.12
VPS50-215ENST00000480943 CYP11A1P05108 521 aa8.06□□□□□ -1.12
VPS50-215ENST00000480943 RNASE1P07998 156 aaKnown RBP8.06□□□□□ -1.12
VPS50-215ENST00000480943 PTPN12Q05209 780 aaKnown RBP8.06□□□□□ -1.12
VPS50-215ENST00000480943 SPRED2Q7Z698 418 aa8.06□□□□□ -1.12
VPS50-215ENST00000480943 EPS8L3Q8TE67 593 aaKnown RBP8.06□□□□□ -1.12
VPS50-215ENST00000480943 FBLIM1Q8WUP2 373 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms