RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	ANO1	Q5XXA6	986 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	PIK3AP1	Q6ZUJ8	805 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	FAM160B2	Q86V87	743 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	ANKRD13A	Q8IZ07	590 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	FAM177A1	Q8N128	213 aa	Predicted RBP	12.87	□□□□□ -0.35
APTX-223	ENST00000479656	CLMN	Q96JQ2	1002 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	ZNF408	Q9H9D4	720 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	ELP3	Q9H9T3	547 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	PCDHA6	Q9UN73	950 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	PCDHA8	Q9Y5H6	950 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	PCDHA1	Q9Y5I3	950 aa		12.87	□□□□□ -0.35
APTX-223	ENST00000479656	C19orf81	C9J6K1	198 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	VCAM1	P19320	739 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	HMGCS2	P54868	508 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	SF3A1	Q15459	793 aa	Known RBP	12.86	□□□□□ -0.35
APTX-223	ENST00000479656	MAP3K11	Q16584	847 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	RILPL1	Q5EBL4	403 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	ARMC9	Q7Z3E5	817 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	FBXO11	Q86XK2	927 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	DAGLB	Q8NCG7	672 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	LINC00301	Q8NCQ3	95 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	GPT2	Q8TD30	523 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	ANP32E	Q9BTT0	268 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	AMN	Q9BXJ7	453 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	POLR3E	Q9NVU0	708 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	ELP1	O95163	1332 aa		12.86	□□□□□ -0.35
APTX-223	ENST00000479656	MYH15	Q9Y2K3	1946 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	ESYT2	A0FGR8	921 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	PRKCSH	P14314	528 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-223	ENST00000479656	NASP	P49321	788 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-223	ENST00000479656	UBE2H	P62256	183 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	STK38	Q15208	465 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	USH1G	Q495M9	461 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	LDHD	Q86WU2	507 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	PGBD1	Q96JS3	809 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	TANGO6	Q9C0B7	1094 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	RPAP3	Q9H6T3	665 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-223	ENST00000479656	BIN2	Q9UBW5	565 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-223	ENST00000479656	TAL1	P17542	331 aa	Predicted RBP	12.85	□□□□□ -0.35
APTX-223	ENST00000479656	CCDC174	Q6PII3	467 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	PRPF38A	Q8NAV1	312 aa	Known RBP	12.85	□□□□□ -0.35
APTX-223	ENST00000479656	RANBP17	Q9H2T7	1088 aa	Known RBP	12.85	□□□□□ -0.35
APTX-223	ENST00000479656	TMEM260	Q9NX78	707 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	PCDHB6	Q9Y5E3	794 aa		12.85	□□□□□ -0.35
APTX-223	ENST00000479656	CCDC194	A0A1B0GVG4	234 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	FLOT1	O75955	427 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	YEATS4	O95619	227 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	ADCY7	P51828	1080 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	SLC39A14	Q15043	492 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	PTPA	Q15257	358 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	KLHL40	Q2TBA0	621 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	JAKMIP3	Q5VZ66	844 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	PPP1R18	Q6NYC8	613 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	ERO1B	Q86YB8	467 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	BICD2	Q8TD16	824 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	OTUD5	Q96G74	571 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	C12orf42	Q96LP6	360 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	SLF1	Q9BQI6	1058 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	PSTPIP2	Q9H939	334 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	RIC8A	Q9NPQ8	531 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	TMOD4	Q9NZQ9	345 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	NOL7	Q9UMY1	257 aa	Known RBP	12.84	□□□□□ -0.35
APTX-223	ENST00000479656	PHIP	Q8WWQ0	1821 aa		12.84	□□□□□ -0.35
APTX-223	ENST00000479656	GOLGA6L4	A6NEF3	574 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	WNT7A	O00755	349 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	SPTLC2	O15270	562 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	ME1	P48163	572 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	MRPL12	P52815	198 aa	Known RBP	12.83	□□□□□ -0.36
APTX-223	ENST00000479656	PPAT	Q06203	517 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	SH3D19	Q5HYK7	790 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	LDLRAD1	Q5T700	205 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	RBM46	Q8TBY0	533 aa	Known RBP	12.83	□□□□□ -0.36
APTX-223	ENST00000479656	PCDHA7	Q9UN72	937 aa		12.83	□□□□□ -0.36
APTX-223	ENST00000479656	SPDYE5	A6NIY4	337 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	IRF6	O14896	467 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	MARCKS	P29966	332 aa	Predicted RBP	12.82	□□□□□ -0.36
APTX-223	ENST00000479656	ZNF174	Q15697	407 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	UBE2S	Q16763	222 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	INF2	Q27J81	1249 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	REXO1	Q8N1G1	1221 aa	Known RBP	12.82	□□□□□ -0.36
APTX-223	ENST00000479656	KCNG4	Q8TDN1	519 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	CUL5	Q93034	780 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	GZF1	Q9H116	711 aa	Predicted RBP	12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L15	C9J2P7	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L13	C9JLJ4	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L11	C9JVI0	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L18	D6R9N7	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L22	D6RA61	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L17	D6RBQ6	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L19	D6RCP7	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L20	D6RJB6	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	MBD3	O95983	291 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L24	Q0WX57	530 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	TTC38	Q5R3I4	469 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	USP17L6P	Q6QN14	398 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	CATSPERG	Q6ZRH7	1159 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	KRT25	Q7Z3Z0	450 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	OPTN	Q96CV9	577 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	SLC10A4	Q96EP9	437 aa		12.82	□□□□□ -0.36
APTX-223	ENST00000479656	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms