RNA–Protein interactions for RNA: ENST00000477970.1

PTPRF-212, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 3,321 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-212ENST00000477970 C6orf50Q9HD87 102 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 STX8Q9UNK0 236 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 GOLGA6L9A6NEM1 432 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 LRRC10BA6NIK2 292 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 AFMP43652 599 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 MTRQ99707 1265 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 PHLPP2Q6ZVD8 1323 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 SLX4Q8IY92 1834 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 CDK11BP21127 795 aaKnown RBP13.82□□□□□ -0.2
PTPRF-212ENST00000477970 STYK1Q6J9G0 422 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 HEATR3Q7Z4Q2 680 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 CEP95Q96GE4 821 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 PANX2Q96RD6 677 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 L2HGDHQ9H9P8 463 aa13.82□□□□□ -0.2
PTPRF-212ENST00000477970 SIPA1L1O43166 1804 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 C6orf229H3BNL8 230 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 HOXA7P31268 230 aaPredicted RBP13.81□□□□□ -0.2
PTPRF-212ENST00000477970 SPAG1Q07617 926 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 NAA15Q9BXJ9 866 aaKnown RBP13.81□□□□□ -0.2
PTPRF-212ENST00000477970 EHD4Q9H223 541 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 SAMSN1Q9NSI8 373 aaKnown RBP13.81□□□□□ -0.2
PTPRF-212ENST00000477970 MTMR4Q9NYA4 1195 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 ADD3Q9UEY8 706 aaKnown RBP13.81□□□□□ -0.2
PTPRF-212ENST00000477970 LIMA1Q9UHB6 759 aaKnown RBP13.81□□□□□ -0.2
PTPRF-212ENST00000477970 ZSCAN12O43309 604 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 RBM10P98175 930 aaKnown RBP13.81□□□□□ -0.2
PTPRF-212ENST00000477970 TC2NQ8N9U0 490 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 PIM2Q9P1W9 311 aa13.81□□□□□ -0.2
PTPRF-212ENST00000477970 FECHP22830 423 aa13.8□□□□□ -0.2
PTPRF-212ENST00000477970 NONOQ15233 471 aaKnown RBP eCLIP13.8□□□□□ -0.2
PTPRF-212ENST00000477970 SEC63Q9UGP8 760 aaKnown RBP13.8□□□□□ -0.2
PTPRF-212ENST00000477970 ADAMTSL1Q8N6G6 1762 aa13.8□□□□□ -0.2
PTPRF-212ENST00000477970 RPN1P04843 607 aaKnown RBP13.8□□□□□ -0.2
PTPRF-212ENST00000477970 GTF2IP78347 998 aa13.8□□□□□ -0.2
PTPRF-212ENST00000477970 SLC4A8Q2Y0W8 1093 aa13.8□□□□□ -0.2
PTPRF-212ENST00000477970 TRMT44Q8IYL2 757 aaKnown RBP13.8□□□□□ -0.2
PTPRF-212ENST00000477970 KBTBD4Q9NVX7 518 aa13.8□□□□□ -0.2
PTPRF-212ENST00000477970 PDHBP11177 359 aa13.8□□□□□ -0.2
PTPRF-212ENST00000477970 COBLL1Q53SF7 1204 aa13.8□□□□□ -0.2
PTPRF-212ENST00000477970 NPM3O75607 178 aaKnown RBP13.79□□□□□ -0.2
PTPRF-212ENST00000477970 STAT6P42226 847 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 NAPAP54920 295 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 NAALADL2Q58DX5 795 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 CCDC51Q96ER9 411 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 PPP1R2P41236 205 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 GPR162Q16538 588 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 REXO1L1PQ8IX06 675 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 CERS5Q8N5B7 392 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 MASTLQ96GX5 879 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 BAG1Q99933 345 aaPredicted RBP13.79□□□□□ -0.2
PTPRF-212ENST00000477970 ZC3H12CQ9C0D7 883 aaKnown RBP13.79□□□□□ -0.2
PTPRF-212ENST00000477970 TRMT1Q9NXH9 659 aaKnown RBP13.79□□□□□ -0.2
PTPRF-212ENST00000477970 MYH4Q9Y623 1939 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 SMCO2A6NFE2 343 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 H0YIN7 160 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 OR52Z1P0C646 297 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 HDLBPQ00341 1268 aaKnown RBP13.79□□□□□ -0.2
PTPRF-212ENST00000477970 NCBP1Q09161 790 aaKnown RBP13.79□□□□□ -0.2
PTPRF-212ENST00000477970 PAK1Q13153 545 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 INF2Q27J81 1249 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 FILIP1LQ4L180 1135 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 CCDC93Q567U6 631 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 NEK8Q86SG6 692 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 ERO1AQ96HE7 468 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 TMEM60Q9H2L4 133 aa13.79□□□□□ -0.2
PTPRF-212ENST00000477970 RHOBTB3O94955 611 aa13.78□□□□□ -0.2
PTPRF-212ENST00000477970 SOGA3Q5TF21 947 aa13.78□□□□□ -0.2
PTPRF-212ENST00000477970 RASGRP4Q8TDF6 673 aa13.78□□□□□ -0.2
PTPRF-212ENST00000477970 BAZ2BQ9UIF8 2168 aaKnown RBP13.78□□□□□ -0.2
PTPRF-212ENST00000477970 COL2A1P02458 1487 aaPredicted RBP13.78□□□□□ -0.2
PTPRF-212ENST00000477970 ETF1P62495 437 aaKnown RBP13.78□□□□□ -0.2
PTPRF-212ENST00000477970 DALRD3Q5D0E6 543 aaKnown RBP13.78□□□□□ -0.2
PTPRF-212ENST00000477970 RRAGBQ5VZM2 374 aa13.78□□□□□ -0.2
PTPRF-212ENST00000477970 C2CD5Q86YS7 1000 aa13.78□□□□□ -0.2
PTPRF-212ENST00000477970 PSME4Q14997 1843 aa13.78□□□□□ -0.2
PTPRF-212ENST00000477970 TTLL1O95922 423 aa13.77□□□□□ -0.2
PTPRF-212ENST00000477970 TRIM14Q14142 442 aa13.77□□□□□ -0.2
PTPRF-212ENST00000477970 USP17L2Q6R6M4 530 aa13.77□□□□□ -0.2
PTPRF-212ENST00000477970 PODNQ7Z5L7 613 aa13.77□□□□□ -0.2
PTPRF-212ENST00000477970 ADSSL1Q8N142 457 aa13.77□□□□□ -0.2
PTPRF-212ENST00000477970 SERPINB13Q9UIV8 391 aa13.77□□□□□ -0.2
PTPRF-212ENST00000477970 AKR1B15C9JRZ8 316 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-212ENST00000477970 H7C1D1 291 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 KLRC4O43908 158 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 GOLGA8HP0CJ92 632 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 TRIM65Q6PJ69 517 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 DPP8Q6V1X1 898 aaPredicted RBP13.77□□□□□ -0.21
PTPRF-212ENST00000477970 IGSF22Q8N9C0 903 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 NOC3LQ8WTT2 800 aaKnown RBP13.77□□□□□ -0.21
PTPRF-212ENST00000477970 MTMR8Q96EF0 704 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 CTNND2Q9UQB3 1225 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 USP17L5A8MUK1 530 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 CASP1P29466 404 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 UBA7P41226 1012 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 KARSQ15046 597 aaKnown RBP13.77□□□□□ -0.21
PTPRF-212ENST00000477970 CCDC17Q96LX7 622 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 ZDHHC15Q96MV8 337 aa13.77□□□□□ -0.21
PTPRF-212ENST00000477970 DDX4Q9NQI0 724 aaKnown RBP13.77□□□□□ -0.21
PTPRF-212ENST00000477970 SHMT1P34896 483 aa13.76□□□□□ -0.21
PTPRF-212ENST00000477970 FXR2P51116 673 aaKnown RBP eCLIP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms