RNA–Protein interactions for RNA: ENST00000477612.5

COL9A3-211, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 635 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-211ENST00000477612 TTBK2Q6IQ55 1244 aa25.58■■□□□ 1.69
COL9A3-211ENST00000477612 CENPQQ7L2Z9 268 aaPredicted RBP25.58■■□□□ 1.69
COL9A3-211ENST00000477612 CHMP4CQ96CF2 233 aa25.58■■□□□ 1.69
COL9A3-211ENST00000477612 AGBL1Q96MI9 1066 aa25.58■■□□□ 1.69
COL9A3-211ENST00000477612 RANBP17Q9H2T7 1088 aaKnown RBP25.58■■□□□ 1.69
COL9A3-211ENST00000477612 ACAD9Q9H845 621 aa25.58■■□□□ 1.69
COL9A3-211ENST00000477612 SYNGAP1Q96PV0 1343 aa25.58■■□□□ 1.69
COL9A3-211ENST00000477612 EVI5O60447 810 aa25.57■■□□□ 1.68
COL9A3-211ENST00000477612 SLC4A3P48751 1232 aa25.57■■□□□ 1.68
COL9A3-211ENST00000477612 ZNF543Q08ER8 600 aa25.57■■□□□ 1.68
COL9A3-211ENST00000477612 CCDC96Q2M329 555 aa25.57■■□□□ 1.68
COL9A3-211ENST00000477612 ANKRD35Q8N283 1001 aa25.57■■□□□ 1.68
COL9A3-211ENST00000477612 ZKSCAN3Q9BRR0 538 aa25.57■■□□□ 1.68
COL9A3-211ENST00000477612 MTMR7Q9Y216 660 aa25.57■■□□□ 1.68
COL9A3-211ENST00000477612 ZNF865P0CJ78 1059 aaPredicted RBP25.56■■□□□ 1.68
COL9A3-211ENST00000477612 PTH1RQ03431 593 aa25.56■■□□□ 1.68
COL9A3-211ENST00000477612 FGD4Q96M96 766 aa25.56■■□□□ 1.68
COL9A3-211ENST00000477612 ZSCAN10Q96SZ4 725 aaPredicted RBP25.56■■□□□ 1.68
COL9A3-211ENST00000477612 RNF146Q9NTX7 359 aa25.56■■□□□ 1.68
COL9A3-211ENST00000477612 DNM1LO00429 736 aa25.55■■□□□ 1.68
COL9A3-211ENST00000477612 ICAM1P05362 532 aa25.55■■□□□ 1.68
COL9A3-211ENST00000477612 SYDE2Q5VT97 1194 aa25.55■■□□□ 1.68
COL9A3-211ENST00000477612 ARRDC4Q8NCT1 418 aa25.55■■□□□ 1.68
COL9A3-211ENST00000477612 TRERF1Q96PN7 1200 aa25.55■■□□□ 1.68
COL9A3-211ENST00000477612 DNAH12Q6ZR08 3092 aa25.55■■□□□ 1.68
COL9A3-211ENST00000477612 LCTP09848 1927 aa25.55■■□□□ 1.68
COL9A3-211ENST00000477612 SNAI1O95863 264 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-211ENST00000477612 SLC16A2P36021 539 aa25.54■■□□□ 1.68
COL9A3-211ENST00000477612 GPATCH4Q5T3I0 446 aaKnown RBP25.54■■□□□ 1.68
COL9A3-211ENST00000477612 ENAHQ8N8S7 591 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-211ENST00000477612 FAM133AQ8N9E0 248 aa25.54■■□□□ 1.68
COL9A3-211ENST00000477612 GPCPD1Q9NPB8 672 aa25.54■■□□□ 1.68
COL9A3-211ENST00000477612 A1CFQ9NQ94 594 aaKnown RBP25.54■■□□□ 1.68
COL9A3-211ENST00000477612 FRMPD2Q68DX3 1309 aaPredicted RBP25.54■■□□□ 1.68
COL9A3-211ENST00000477612 CYP21A2P08686 494 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 ALAS1P13196 640 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 TAL1P17542 331 aaPredicted RBP25.53■■□□□ 1.68
COL9A3-211ENST00000477612 SNAP25P60880 206 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 CCDC174Q6PII3 467 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 PNMA1Q8ND90 353 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 MAP4K1Q92918 833 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 HOMER2Q9NSB8 354 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 U3KPZ7 1027 aaPredicted RBP25.53■■□□□ 1.68
COL9A3-211ENST00000477612 MYH6P13533 1939 aa25.53■■□□□ 1.68
COL9A3-211ENST00000477612 PNMA2Q9UL42 364 aa25.52■■□□□ 1.68
COL9A3-211ENST00000477612 COLQQ9Y215 455 aaPredicted RBP25.52■■□□□ 1.68
COL9A3-211ENST00000477612 CNPY2Q9Y2B0 182 aa25.52■■□□□ 1.68
COL9A3-211ENST00000477612 TNKSO95271 1327 aa25.52■■□□□ 1.68
COL9A3-211ENST00000477612 AKR1A1P14550 325 aa25.51■■□□□ 1.67
COL9A3-211ENST00000477612 MUM1L1Q5H9M0 696 aa25.51■■□□□ 1.67
COL9A3-211ENST00000477612 HABP4Q5JVS0 413 aaKnown RBP25.51■■□□□ 1.67
COL9A3-211ENST00000477612 ANO1Q5XXA6 986 aa25.51■■□□□ 1.67
COL9A3-211ENST00000477612 PRO3102Q9H379 93 aa25.51■■□□□ 1.67
COL9A3-211ENST00000477612 KAT14Q9H8E8 782 aa25.51■■□□□ 1.67
COL9A3-211ENST00000477612 CCPG1Q9ULG6 757 aa25.51■■□□□ 1.67
COL9A3-211ENST00000477612 POTEB2H3BUK9 544 aa25.5■■□□□ 1.67
COL9A3-211ENST00000477612 SEC23AQ15436 765 aa25.5■■□□□ 1.67
COL9A3-211ENST00000477612 ABHD16BQ9H3Z7 469 aa25.5■■□□□ 1.67
COL9A3-211ENST00000477612 CDKN2AIPQ9NXV6 580 aaPredicted RBP25.5■■□□□ 1.67
COL9A3-211ENST00000477612 WDR19Q8NEZ3 1342 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 RARBP10826 455 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 CNTN2Q02246 1040 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 LRRC41Q15345 812 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 LRRC26Q2I0M4 334 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 BMP2KLQ5H9B9 411 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 GJC2Q5T442 439 aaPredicted RBP25.49■■□□□ 1.67
COL9A3-211ENST00000477612 CYB5R4Q7L1T6 521 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 UBAC1Q9BSL1 405 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 SENP6Q9GZR1 1112 aaPredicted RBP25.49■■□□□ 1.67
COL9A3-211ENST00000477612 CYP39A1Q9NYL5 469 aa25.49■■□□□ 1.67
COL9A3-211ENST00000477612 SOWAHBA6NEL2 793 aa25.48■■□□□ 1.67
COL9A3-211ENST00000477612 TRDNQ13061 729 aa25.48■■□□□ 1.67
COL9A3-211ENST00000477612 ACVR2BQ13705 512 aa25.48■■□□□ 1.67
COL9A3-211ENST00000477612 ARMCX2Q7L311 632 aa25.48■■□□□ 1.67
COL9A3-211ENST00000477612 KATNBL1Q9H079 304 aa25.48■■□□□ 1.67
COL9A3-211ENST00000477612 FAM184BQ9ULE4 1060 aa25.48■■□□□ 1.67
COL9A3-211ENST00000477612 KBTBD13C9JR72 458 aa25.47■■□□□ 1.67
COL9A3-211ENST00000477612 ASPRV1Q53RT3 343 aa25.47■■□□□ 1.67
COL9A3-211ENST00000477612 CCDC144CPQ8IYA2 1237 aa25.47■■□□□ 1.67
COL9A3-211ENST00000477612 C7orf61Q8IZ16 206 aa25.47■■□□□ 1.67
COL9A3-211ENST00000477612 XPNPEP3Q9NQH7 507 aa25.47■■□□□ 1.67
COL9A3-211ENST00000477612 LRRC37A2A6NM11 1700 aa25.46■■□□□ 1.67
COL9A3-211ENST00000477612 ASB14A6NK59 587 aa25.46■■□□□ 1.67
COL9A3-211ENST00000477612 E7EWF7 191 aa25.46■■□□□ 1.67
COL9A3-211ENST00000477612 SLC34A2O95436 690 aa25.46■■□□□ 1.67
COL9A3-211ENST00000477612 GOLGA8HP0CJ92 632 aa25.46■■□□□ 1.67
COL9A3-211ENST00000477612 IFIT1BQ5T764 474 aaKnown RBP25.46■■□□□ 1.67
COL9A3-211ENST00000477612 CHRDL2Q6WN34 429 aa25.46■■□□□ 1.67
COL9A3-211ENST00000477612 ASTN1O14525 1302 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 ADAMTS4O75173 837 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 DUSP11O75319 330 aaKnown RBP25.45■■□□□ 1.66
COL9A3-211ENST00000477612 NCOA7Q8NI08 942 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 MORC4Q8TE76 937 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 CLEC4DQ8WXI8 215 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 ESYT1Q9BSJ8 1104 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 UBA5Q9GZZ9 404 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 MAF1Q9H063 256 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 RBM8AQ9Y5S9 174 aaKnown RBP25.45■■□□□ 1.66
COL9A3-211ENST00000477612 TAF6LQ9Y6J9 622 aa25.45■■□□□ 1.66
COL9A3-211ENST00000477612 RANBP2P49792 3224 aaKnown RBP25.44■■□□□ 1.66
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms