RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 MPP2Q14168 576 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 C22orf34Q6ZV56 151 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 METTL16Q86W50 562 aaKnown RBP6.31□□□□□ -1.4
VPS13A-210ENST00000471439 FMNL2Q96PY5 1086 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 CARS2Q9HA77 564 aaKnown RBP6.31□□□□□ -1.4
VPS13A-210ENST00000471439 BRMS1Q9HCU9 246 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 UBP1Q9NZI7 540 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 SNX11Q9Y5W9 270 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 NCOA3Q9Y6Q9 1424 aa6.31□□□□□ -1.4
VPS13A-210ENST00000471439 A0A0C4DFX4 3053 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 SCAMP3O14828 347 aaKnown RBP6.3□□□□□ -1.4
VPS13A-210ENST00000471439 PWP1Q13610 501 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 TMEM201Q5SNT2 666 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 HS2ST1Q7LGA3 356 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 BAHD1Q8TBE0 780 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-210ENST00000471439 PI4K2BQ8TCG2 481 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 CYB5D2Q8WUJ1 264 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 ZNF296Q8WUU4 475 aaPredicted RBP6.3□□□□□ -1.4
VPS13A-210ENST00000471439 ASB11Q8WXH4 323 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 ABHD8Q96I13 439 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 BCL11AQ9H165 835 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 KCNQ5Q9NR82 932 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 RNF114Q9Y508 228 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 PCDHGB7Q9Y5F8 929 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 FMN1Q68DA7 1419 aa6.3□□□□□ -1.4
VPS13A-210ENST00000471439 SPAG9O60271 1321 aaKnown RBP6.29□□□□□ -1.4
VPS13A-210ENST00000471439 PRR36Q9H6K5 1346 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 COL22A1Q8NFW1 1626 aaPredicted RBP6.29□□□□□ -1.4
VPS13A-210ENST00000471439 GREM1O60565 184 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 POLR2BP30876 1174 aaKnown RBP6.29□□□□□ -1.4
VPS13A-210ENST00000471439 ZNF76P36508 570 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 RAD51AP2Q09MP3 1159 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 ZNF394Q53GI3 561 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 KRTAP19-1Q8IUB9 90 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 KRTAP1-3Q8IUG1 177 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 UBE2FQ969M7 185 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 GOLGA2P5Q9HBQ8 144 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 PCDHB14Q9Y5E9 798 aa6.29□□□□□ -1.4
VPS13A-210ENST00000471439 TXKP42681 527 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 LCE3BQ5TA77 95 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 ZNF746Q6NUN9 644 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-210ENST00000471439 SLC23A3Q6PIS1 610 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 SLFN12Q8IYM2 578 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 KIF2CQ99661 725 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 LRRC3Q9BY71 257 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 ZSWIM5Q9P217 1185 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 CEP131Q9UPN4 1083 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 SUPT16HQ9Y5B9 1047 aaKnown RBP6.28□□□□□ -1.4
VPS13A-210ENST00000471439 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.28□□□□□ -1.4
VPS13A-210ENST00000471439 SLIT2O94813 1529 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 ADCY9O60503 1353 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 MYOM2P54296 1465 aa6.28□□□□□ -1.4
VPS13A-210ENST00000471439 WASHC2CQ9Y4E1 1318 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 EFCAB6Q5THR3 1501 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 ETV3P41162 512 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 SEZ6Q53EL9 994 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 OVOS1Q6IE37 1185 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 NT5DC4Q86YG4 428 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 DTWD2Q8NBA8 298 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 ANTXR1Q9H6X2 564 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 C19orf73Q9NVV2 129 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 MAP3K5Q99683 1374 aa6.27□□□□□ -1.41
VPS13A-210ENST00000471439 INO80Q9ULG1 1556 aaPredicted RBP6.27□□□□□ -1.41
VPS13A-210ENST00000471439 MST1RQ04912 1400 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 TOMM70O94826 608 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 KIR3DL1P43629 444 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 YARSP54577 528 aaKnown RBP6.26□□□□□ -1.41
VPS13A-210ENST00000471439 CLCQ05315 142 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 VPS72Q15906 364 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 CWF19L2Q2TBE0 894 aaKnown RBP6.26□□□□□ -1.41
VPS13A-210ENST00000471439 ARSHQ5FYA8 562 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 GK5Q6ZS86 529 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 PHACTR4Q8IZ21 702 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 RNF34Q969K3 372 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 EAF1Q96JC9 268 aaPredicted RBP6.26□□□□□ -1.41
VPS13A-210ENST00000471439 METTL5Q9NRN9 209 aaKnown RBP6.26□□□□□ -1.41
VPS13A-210ENST00000471439 TMEM2Q9UHN6 1383 aa6.26□□□□□ -1.41
VPS13A-210ENST00000471439 TMEM131LA2VDJ0 1609 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 SHISA3A0PJX4 238 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 CCDC85CA6NKD9 419 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 SLC22A31A6NKX4 558 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 ESR1P03372 595 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 CYP7A1P22680 504 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 ERCC5P28715 1186 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-210ENST00000471439 ITGAEP38570 1179 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 TNNI2P48788 182 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 RACK1P63244 317 aaKnown RBP6.25□□□□□ -1.41
VPS13A-210ENST00000471439 APOBRQ0VD83 1088 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 FYB2Q5VWT5 728 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 KREMEN1Q96MU8 473 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 DUSP15Q9H1R2 295 aaPredicted RBP6.25□□□□□ -1.41
VPS13A-210ENST00000471439 CTNND2Q9UQB3 1225 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 CROCC2H7BZ55 1655 aa6.25□□□□□ -1.41
VPS13A-210ENST00000471439 CACNA1AO00555 2505 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 ERVK-7P63135 1459 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 UBOX5O94941 541 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 YBX3P16989 372 aaKnown RBP eCLIP6.24□□□□□ -1.41
VPS13A-210ENST00000471439 RALGPS1Q5JS13 557 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 OGFOD2Q6N063 350 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 THAP5Q7Z6K1 395 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms