RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 FGD1P98174 961 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 COG2Q14746 738 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CDC37Q16543 378 aaPredicted RBP11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CCL15Q16663 113 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CCDC96Q2M329 555 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.47□□□□□ -0.57
SF3A1-207ENST00000471342 FAM160B2Q86V87 743 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 IFNL1Q8IU54 200 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 PRPF38AQ8NAV1 312 aaKnown RBP11.47□□□□□ -0.57
SF3A1-207ENST00000471342 RGS22Q8NE09 1264 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 FBXO18Q8NFZ0 1043 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CRYGNQ8WXF5 182 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 GPKOWQ92917 476 aaPredicted RBP eCLIP11.47□□□□□ -0.57
SF3A1-207ENST00000471342 COA7Q96BR5 231 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CHAMP1Q96JM3 812 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CAPNS2Q96L46 248 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 FEZ1Q99689 392 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 SLF1Q9BQI6 1058 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 SH2D4AQ9H788 454 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 VAT1LQ9HCJ6 419 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 BARHL2Q9NY43 387 aa11.47□□□□□ -0.57
SF3A1-207ENST00000471342 CEP350Q5VT06 3117 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 CCDC196A0A1B0GTZ2 297 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 PDHXO00330 501 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 MEIS2O14770 477 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 DEXIO95424 95 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 BRD1O95696 1058 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 IGHA2P01877 340 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 SCG2P13521 617 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 HERVK_113P62684 666 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 DEFB115Q30KQ5 88 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 MUM1L1Q5H9M0 696 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 SYNE3Q6ZMZ3 975 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 GADL1Q6ZQY3 521 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 FASTKD5Q7L8L6 764 aaKnown RBP11.46□□□□□ -0.57
SF3A1-207ENST00000471342 CCDC102AQ96A19 550 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 KIFC2Q96AC6 838 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 FGD4Q96M96 766 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 ZMYND12Q9H0C1 365 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 VPS54Q9P1Q0 977 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.46□□□□□ -0.57
SF3A1-207ENST00000471342 MORF4L1Q9UBU8 362 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 KCNJ14Q9UNX9 436 aa11.46□□□□□ -0.57
SF3A1-207ENST00000471342 FAM205CA6NFA0 338 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 MANSC4A6NHS7 340 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-207ENST00000471342 FLOT1O75955 427 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 ICAM1P05362 532 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 SSRP1Q08945 709 aaKnown RBP11.45□□□□□ -0.58
SF3A1-207ENST00000471342 RESTQ13127 1097 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 KRT40Q6A162 431 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 C17orf99Q6UX52 265 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 CHURC1Q8WUH1 139 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 PIBF1Q8WXW3 757 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 ALG1Q9BT22 464 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 CFHR5Q9BXR6 569 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 RAVER2Q9HCJ3 691 aaKnown RBP11.45□□□□□ -0.58
SF3A1-207ENST00000471342 TMOD4Q9NZQ9 345 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 COL20A1Q9P218 1284 aa11.45□□□□□ -0.58
SF3A1-207ENST00000471342 NAP1L2Q9ULW6 460 aaPredicted RBP11.45□□□□□ -0.58
SF3A1-207ENST00000471342 WDR33Q9C0J8 1336 aaKnown RBP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 ESYT2A0FGR8 921 aa11.44□□□□□ -0.58
SF3A1-207ENST00000471342 U2AF2P26368 475 aaKnown RBP eCLIP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 ANP32AP39687 249 aaKnown RBP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 TOB1P50616 345 aaPredicted RBP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 HMGN5P82970 282 aaKnown RBP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 DAGLBQ8NCG7 672 aa11.44□□□□□ -0.58
SF3A1-207ENST00000471342 TANGO6Q9C0B7 1094 aa11.44□□□□□ -0.58
SF3A1-207ENST00000471342 PORCNQ9H237 461 aa11.44□□□□□ -0.58
SF3A1-207ENST00000471342 ZCCHC17Q9NP64 241 aaKnown RBP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 HOXC10Q9NYD6 342 aa11.44□□□□□ -0.58
SF3A1-207ENST00000471342 ABT1Q9ULW3 272 aaKnown RBP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.44□□□□□ -0.58
SF3A1-207ENST00000471342 NFIBO00712 420 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 DHX16O60231 1041 aaKnown RBP11.43□□□□□ -0.58
SF3A1-207ENST00000471342 MMP1P03956 469 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 HSPA6P17066 643 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 OAZ1P54368 228 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 GUCY1B3Q02153 619 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 NR5A1Q13285 461 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 BECN1Q14457 450 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 HOMER1Q86YM7 354 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 PURBQ96QR8 312 aaKnown RBP11.43□□□□□ -0.58
SF3A1-207ENST00000471342 MOV10L1Q9BXT6 1211 aaKnown RBP11.43□□□□□ -0.58
SF3A1-207ENST00000471342 CWC22Q9HCG8 908 aaKnown RBP11.43□□□□□ -0.58
SF3A1-207ENST00000471342 SH3GLB2Q9NR46 395 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 PCDHA6Q9UN73 950 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 SMC3Q9UQE7 1217 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 PCDHA8Q9Y5H6 950 aa11.43□□□□□ -0.58
SF3A1-207ENST00000471342 DNAJC25-GNG10A0A024R161 153 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 BTBD18B2RXH4 712 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 CPLX1O14810 134 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 RAD21O60216 631 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 HSD17B4P51659 736 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 INHBEP58166 350 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 NOGQ13253 232 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 FAM173BQ6P4H8 233 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 CCDC174Q6PII3 467 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 FBXO11Q86XK2 927 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 RIOX2Q8IUF8 465 aa11.42□□□□□ -0.58
SF3A1-207ENST00000471342 RASGRP4Q8TDF6 673 aa11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms