RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 CHD4Q14839 1912 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 F8W031 263 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-208ENST00000470268 CDC45O75419 566 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 VIL1P09327 827 aaKnown RBP5.69□□□□□ -1.5
SF3B1-208ENST00000470268 PDE6AP16499 860 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 LMNB1P20700 586 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 ADD2P35612 726 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 PLA2G4AP47712 749 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 MECOMQ03112 1051 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 NMIQ13287 307 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-208ENST00000470268 TTF1Q15361 905 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-208ENST00000470268 CWC27Q6UX04 472 aaKnown RBP5.69□□□□□ -1.5
SF3B1-208ENST00000470268 ZNF589Q86UQ0 364 aaPredicted RBP5.69□□□□□ -1.5
SF3B1-208ENST00000470268 MAGEB6Q8N7X4 407 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 GOLGA6L1Q8N7Z2 621 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 WDR66Q8TBY9 1149 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 JDP2Q8WYK2 163 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 OSBP2Q969R2 916 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 GMLQ99445 158 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 PUS7LQ9H0K6 701 aaKnown RBP5.69□□□□□ -1.5
SF3B1-208ENST00000470268 LRP2BPQ9P2M1 347 aa5.69□□□□□ -1.5
SF3B1-208ENST00000470268 ZNF541Q9H0D2 1346 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 ZNF532Q9HCE3 1301 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 SHTN1A0MZ66 631 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 RNF113AO15541 343 aaKnown RBP5.68□□□□□ -1.5
SF3B1-208ENST00000470268 LDHBP07195 334 aaKnown RBP5.68□□□□□ -1.5
SF3B1-208ENST00000470268 TXLNAP40222 546 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 HIF1AQ16665 826 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 NOM1Q5C9Z4 860 aaKnown RBP5.68□□□□□ -1.5
SF3B1-208ENST00000470268 ZMYM1Q5SVZ6 1142 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 C9orf131Q5VYM1 1079 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 CCDC129Q6ZRS4 1044 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 KIAA0825Q8IV33 1275 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 KLRG1Q96E93 195 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 RAI14Q9P0K7 980 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 RNF181Q9P0P0 153 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 PCDHAC2Q9Y5I4 1007 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 ZNF646O15015 1829 aaPredicted RBP5.68□□□□□ -1.5
SF3B1-208ENST00000470268 MAST3O60307 1309 aa5.68□□□□□ -1.5
SF3B1-208ENST00000470268 RFX7Q2KHR2 1363 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 A0A1B0GTH6 734 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 KRBA1A5PL33 1030 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 M0R2C6 588 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 FOXP2O15409 715 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 SGSM2O43147 1006 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 EIF1AXP47813 144 aaKnown RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 MAP3K12Q12852 859 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 UBE3CQ15386 1083 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 CIAPIN1Q6FI81 312 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 MIGA1Q8NAN2 632 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 TBC1D22AQ8WUA7 517 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 EDARADDQ8WWZ3 215 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 ASB16Q96NS5 453 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 CITED4Q96RK1 184 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 TTF2Q9UNY4 1162 aaKnown RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 GRIN3BO60391 1043 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 EGFRP00533 1210 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 CYP7A1P22680 504 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 MAPK1P28482 360 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 FKBP1AP62942 108 aaKnown RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 DGKZQ13574 1117 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 VPS53Q5VIR6 699 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 NAA16Q6N069 864 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 DZIP1Q86YF9 867 aaKnown RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 ZGPATQ8N5A5 531 aaKnown RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 FOXD4L4Q8WXT5 416 aaPredicted RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 APPBP2Q92624 585 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 IFT43Q96FT9 208 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 RIOK1Q9BRS2 568 aaKnown RBP5.67□□□□□ -1.5
SF3B1-208ENST00000470268 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.67□□□□□ -1.51e-6■□□□□ 10.8
SF3B1-208ENST00000470268 DIAPH3Q9NSV4 1193 aa5.67□□□□□ -1.5
SF3B1-208ENST00000470268 DOCK2Q92608 1830 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 GPAA1O43292 621 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 DDNO94850 711 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 ZFYP08048 801 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 PHKA2P46019 1235 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 SNRPNP63162 240 aaKnown RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 DYNLL1P63167 89 aaKnown RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 PTH1RQ03431 593 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 MCMDC2Q4G0Z9 681 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 SPTY2D1Q68D10 685 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 APOBEC3HQ6NTF7 200 aaKnown RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 TICAM2Q86XR7 235 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 ZSCAN29Q8IWY8 852 aaPredicted RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 PGBD3Q8N328 593 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 LCORLQ8N3X6 602 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 AIDAQ96BJ3 306 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 RBCK1Q9BYM8 510 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 HELLSQ9NRZ9 838 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 KLK14Q9P0G3 267 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 SUGT1Q9Y2Z0 365 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 DAGLAQ9Y4D2 1042 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 MYO5AQ9Y4I1 1855 aaKnown RBP5.66□□□□□ -1.5
SF3B1-208ENST00000470268 MROH7-TTC4A0A0A0MT08 1334 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 GAKO14976 1311 aa5.66□□□□□ -1.5
SF3B1-208ENST00000470268 GPR75-ASB3A0A0A6YYF3 556 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 HIP1O00291 1037 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 NDUFB5O43674 189 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 PRKAB2O43741 272 aa5.65□□□□□ -1.5
SF3B1-208ENST00000470268 FZD6O60353 706 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms