RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 MTMR10Q9NXD2 777 aa20.71■□□□□ 0.91
COL7A1-208ENST00000470076 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.71■□□□□ 0.91
COL7A1-208ENST00000470076 TRIM43BA6NCK2 446 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 MOXD2PA6NHM9 499 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 ORC4O43929 436 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 RANBP6O60518 1105 aaKnown RBP20.7■□□□□ 0.9
COL7A1-208ENST00000470076 ACLYP53396 1101 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 TKFCQ3LXA3 575 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 FAM109BQ6ICB4 259 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-208ENST00000470076 RCSD1Q6JBY9 416 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 SH3RF1Q7Z6J0 888 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 SLC17A8Q8NDX2 589 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 KLHDC9Q8NEP7 349 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 NUP133Q8WUM0 1156 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 TRIM43Q96BQ3 446 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-208ENST00000470076 FGD4Q96M96 766 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 INCENPQ9NQS7 918 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 HOMER2Q9NSB8 354 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 STXBP5LQ9Y2K9 1186 aa20.7■□□□□ 0.9
COL7A1-208ENST00000470076 A0A0C4DFX4 3053 aa20.69■□□□□ 0.9
COL7A1-208ENST00000470076 CLTBP09497 229 aa20.69■□□□□ 0.9
COL7A1-208ENST00000470076 FGRP09769 529 aa20.69■□□□□ 0.9
COL7A1-208ENST00000470076 ARMCX2Q7L311 632 aa20.69■□□□□ 0.9
COL7A1-208ENST00000470076 STARD7Q9NQZ5 370 aa20.69■□□□□ 0.9
COL7A1-208ENST00000470076 RNF146Q9NTX7 359 aa20.69■□□□□ 0.9
COL7A1-208ENST00000470076 ZNF536O15090 1300 aa20.69■□□□□ 0.9
COL7A1-208ENST00000470076 POTEB2H3BUK9 544 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 NMT2O60551 498 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 CST5P28325 142 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-208ENST00000470076 NOVP48745 357 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 SHHQ15465 462 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 CCDC144BQ3MJ40 725 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 MCMDC2Q4G0Z9 681 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 CCSAPQ6IQ19 270 aaPredicted RBP20.68■□□□□ 0.9
COL7A1-208ENST00000470076 KCTD1Q719H9 257 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 CCDC144CPQ8IYA2 1237 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 FAM133AQ8N9E0 248 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 AGBL1Q96MI9 1066 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 TOX2Q96NM4 488 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 SPC25Q9HBM1 224 aa20.68■□□□□ 0.9
COL7A1-208ENST00000470076 A1CFQ9NQ94 594 aaKnown RBP20.68■□□□□ 0.9
COL7A1-208ENST00000470076 A0A0D9SFI3 127 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 KIAA0355O15063 1070 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 PQBP1O60828 265 aaKnown RBP20.67■□□□□ 0.9
COL7A1-208ENST00000470076 FGAP02671 866 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 CNTN2Q02246 1040 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 KCNA10Q16322 511 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 ANKRD33Q7Z3H0 272 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 PCSK9Q8NBP7 692 aaKnown RBP20.67■□□□□ 0.9
COL7A1-208ENST00000470076 CHMP4CQ96CF2 233 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 FAM227BQ96M60 508 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 TRERF1Q96PN7 1200 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 PRR12Q9ULL5 1215 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 ZMYM6O95789 1325 aa20.67■□□□□ 0.9
COL7A1-208ENST00000470076 DCDC2CA8MYV0 355 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 C6orf222P0C671 652 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-208ENST00000470076 ALAS1P13196 640 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 GJA9P57773 515 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 C9orf50Q5SZB4 431 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 DCAF4Q8WV16 495 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 GLT1D1Q96MS3 346 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 UPF3AQ9H1J1 476 aaKnown RBP20.66■□□□□ 0.9
COL7A1-208ENST00000470076 TOMM22Q9NS69 142 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 ELP1O95163 1332 aa20.66■□□□□ 0.9
COL7A1-208ENST00000470076 ASB14A6NK59 587 aa20.65■□□□□ 0.9
COL7A1-208ENST00000470076 ADCY6O43306 1168 aa20.65■□□□□ 0.9
COL7A1-208ENST00000470076 RAG1P15918 1043 aa20.65■□□□□ 0.9
COL7A1-208ENST00000470076 CCDC174Q6PII3 467 aa20.65■□□□□ 0.9
COL7A1-208ENST00000470076 LNPKQ9C0E8 428 aa20.65■□□□□ 0.9
COL7A1-208ENST00000470076 KATNBL1Q9H079 304 aa20.65■□□□□ 0.9
COL7A1-208ENST00000470076 TMEM39AQ9NV64 488 aa20.65■□□□□ 0.9
COL7A1-208ENST00000470076 MROH7Q68CQ1 1323 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 MYADML2A6NDP7 307 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 TRIM6-TRIM34B2RNG4 842 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 HSPD1P10809 573 aaKnown RBP20.64■□□□□ 0.89
COL7A1-208ENST00000470076 ITGB8P26012 769 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 FAAP100Q0VG06 881 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 NMIQ13287 307 aaPredicted RBP20.64■□□□□ 0.89
COL7A1-208ENST00000470076 CCDC96Q2M329 555 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 SMC5Q8IY18 1101 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 RWDD1Q9H446 243 aaPredicted RBP20.64■□□□□ 0.89
COL7A1-208ENST00000470076 TCP11L1Q9NUJ3 509 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 MTMR7Q9Y216 660 aa20.64■□□□□ 0.89
COL7A1-208ENST00000470076 CCDC171Q6TFL3 1326 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 SOWAHBA6NEL2 793 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 ASGR1P07306 291 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 TOP1P11387 765 aaKnown RBP20.63■□□□□ 0.89
COL7A1-208ENST00000470076 PCP11498 1178 aaKnown RBP20.63■□□□□ 0.89
COL7A1-208ENST00000470076 NKX3-2P78367 333 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 RRP12Q5JTH9 1297 aaKnown RBP20.63■□□□□ 0.89
COL7A1-208ENST00000470076 GNASQ5JWF2 1037 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 ZNF697Q5TEC3 545 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 RASGRP2Q7LDG7 609 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 ZNF589Q86UQ0 364 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-208ENST00000470076 CCPG1Q9ULG6 757 aa20.63■□□□□ 0.89
COL7A1-208ENST00000470076 ICAM1P05362 532 aa20.62■□□□□ 0.89
COL7A1-208ENST00000470076 MFAP1P55081 439 aaKnown RBP20.62■□□□□ 0.89
COL7A1-208ENST00000470076 SNAP25P60880 206 aa20.62■□□□□ 0.89
COL7A1-208ENST00000470076 TNFAIP2Q03169 654 aa20.62■□□□□ 0.89
COL7A1-208ENST00000470076 MUM1L1Q5H9M0 696 aa20.62■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms