RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 GJA10Q969M2 543 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 RBM17Q96I25 401 aaKnown RBP21.53■■□□□ 1.04
VIM-203ENST00000469543 ZMYND12Q9H0C1 365 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 ZSWIM4Q9H7M6 989 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 RWDD2AQ9UIY3 292 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 DAGLAQ9Y4D2 1042 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 ATP2B4P23634 1241 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 TXLNAP40222 546 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 CERS5Q8N5B7 392 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 ACRBPQ8NEB7 543 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 ZNF397Q8NF99 534 aaPredicted RBP21.53■■□□□ 1.04
VIM-203ENST00000469543 KCNQ5Q9NR82 932 aa21.53■■□□□ 1.04
VIM-203ENST00000469543 DDX41Q9UJV9 622 aaKnown RBP21.53■■□□□ 1.04
VIM-203ENST00000469543 CCP110O43303 1012 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 MFAP3LO75121 409 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 TBCKQ8TEA7 893 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 ADGRG1Q9Y653 693 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 KLRC4O43908 158 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 PLCG1P19174 1290 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 CASQ1P31415 396 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 FILIP1LQ4L180 1135 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 ZBTB9Q96C00 473 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 GPCPD1Q9NPB8 672 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 ST7Q9NRC1 585 aa21.52■■□□□ 1.04
VIM-203ENST00000469543 AKR1B1P15121 316 aa21.52■■□□□ 1.03
VIM-203ENST00000469543 COPB1P53618 953 aaKnown RBP21.52■■□□□ 1.03
VIM-203ENST00000469543 CCDC148Q8NFR7 591 aa21.52■■□□□ 1.03
VIM-203ENST00000469543 PCDHAC2Q9Y5I4 1007 aa21.52■■□□□ 1.03
VIM-203ENST00000469543 NHSQ6T4R5 1651 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 TXKP42681 527 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 ERVK-24P63145 666 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 FCHSD1Q86WN1 690 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 POTEDQ86YR6 584 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 KIFC2Q96AC6 838 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 CTAGE1Q96RT6 745 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 NUP88Q99567 741 aaPredicted RBP21.51■■□□□ 1.03
VIM-203ENST00000469543 TFR2Q9UP52 801 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 MAST2Q6P0Q8 1798 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 FCER1AP12319 257 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 UBXN1Q04323 297 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 SHROOM1Q2M3G4 852 aaPredicted RBP21.51■■□□□ 1.03
VIM-203ENST00000469543 C15orf52Q6ZUT6 534 aaKnown RBP21.51■■□□□ 1.03
VIM-203ENST00000469543 ADSSL1Q8N142 457 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 PROM2Q8N271 834 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 PANX2Q96RD6 677 aa21.51■■□□□ 1.03
VIM-203ENST00000469543 SRRTQ9BXP5 876 aaKnown RBP21.51■■□□□ 1.03
VIM-203ENST00000469543 DDX60LQ5H9U9 1706 aaKnown RBP21.5■■□□□ 1.03
VIM-203ENST00000469543 LRRC10BA6NIK2 292 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 POLRMTO00411 1230 aaKnown RBP21.5■■□□□ 1.03
VIM-203ENST00000469543 ERCC3P19447 782 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 MNS1Q8NEH6 495 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 RRP36Q96EU6 259 aaKnown RBP21.5■■□□□ 1.03
VIM-203ENST00000469543 CHP1Q99653 195 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 BBOX1O75936 387 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 CCDC175P0C221 793 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 PDHBP11177 359 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 SLC16A2P36021 539 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 CLCN6P51797 869 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 ATP2B2Q01814 1243 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 STK4Q13043 487 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 DPP8Q6V1X1 898 aaPredicted RBP21.5■■□□□ 1.03
VIM-203ENST00000469543 CCDC12Q8WUD4 166 aaPredicted RBP21.5■■□□□ 1.03
VIM-203ENST00000469543 UBXN4Q92575 508 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 KBTBD4Q9NVX7 518 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 LIMA1Q9UHB6 759 aaKnown RBP21.5■■□□□ 1.03
VIM-203ENST00000469543 MYH8P13535 1937 aa21.5■■□□□ 1.03
VIM-203ENST00000469543 FAM196BA6NMK8 535 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 CACNB3P54284 484 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 TTBK2Q6IQ55 1244 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 CABP7Q86V35 215 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 SPZ1Q9BXG8 430 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 OGFRQ9NZT2 677 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 SEC63Q9UGP8 760 aaKnown RBP21.49■■□□□ 1.03
VIM-203ENST00000469543 CDK5RAP2Q96SN8 1893 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 EDIL3O43854 480 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 RAD21O60216 631 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 NONOQ15233 471 aaKnown RBP eCLIP21.49■■□□□ 1.03
VIM-203ENST00000469543 DAGLBQ8NCG7 672 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 FEZ1Q99689 392 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 ZNF287Q9HBT7 754 aa21.49■■□□□ 1.03
VIM-203ENST00000469543 LY75O60449 1722 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 NAV1Q8NEY1 1877 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 MAP3K9P80192 1104 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 CT47A1Q5JQC4 288 aaPredicted RBP21.48■■□□□ 1.03
VIM-203ENST00000469543 ZFPM1Q8IX07 1006 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 MTMR4Q9NYA4 1195 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 TTF2Q9UNY4 1162 aaKnown RBP21.48■■□□□ 1.03
VIM-203ENST00000469543 THSD7AQ9UPZ6 1657 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 OR52Z1P0C646 297 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 KLK7P49862 253 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 CCDC178Q5BJE1 867 aa21.48■■□□□ 1.03
VIM-203ENST00000469543 MMTAG2Q9BU76 263 aaKnown RBP21.48■■□□□ 1.03
VIM-203ENST00000469543 SLC37A4O43826 429 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 TDP2O95551 362 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 H2AFXP16104 143 aaPredicted RBP21.47■■□□□ 1.03
VIM-203ENST00000469543 KRT9P35527 623 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 NEK8Q86SG6 692 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 C6orf50Q9HD87 102 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 ABHD10Q9NUJ1 306 aa21.47■■□□□ 1.03
VIM-203ENST00000469543 TADA3O75528 432 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms