RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 FGAP02671 866 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 IKQ13123 557 aaPredicted RBP19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 NMIQ13287 307 aaPredicted RBP19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 TRIM60Q495X7 471 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 RCSD1Q6JBY9 416 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 FERMT2Q96AC1 680 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 FAM184BQ9ULE4 1060 aa19.61■□□□□ 0.73
CCDC28B-204ENST00000469003 ZNF536O15090 1300 aa19.6■□□□□ 0.73
CCDC28B-204ENST00000469003 HSPD1P10809 573 aaKnown RBP19.6■□□□□ 0.73
CCDC28B-204ENST00000469003 B4GALNT3Q6L9W6 998 aa19.6■□□□□ 0.73
CCDC28B-204ENST00000469003 KCTD1Q719H9 257 aa19.6■□□□□ 0.73
CCDC28B-204ENST00000469003 FGD4Q96M96 766 aa19.6■□□□□ 0.73
CCDC28B-204ENST00000469003 ACAD9Q9H845 621 aa19.6■□□□□ 0.73
CCDC28B-204ENST00000469003 CCDC171Q6TFL3 1326 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 ADAMTS4O75173 837 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 TKFCQ3LXA3 575 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 ZNF589Q86UQ0 364 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 CHD1LQ86WJ1 897 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 RILPL2Q969X0 211 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 LENG1Q96BZ8 264 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 CHMP4CQ96CF2 233 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 TSEN34Q9BSV6 310 aaKnown RBP19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 TOMM22Q9NS69 142 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 HOMER2Q9NSB8 354 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 ZHX1Q9UKY1 873 aaPredicted RBP19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 MCM3APO60318 1980 aa19.59■□□□□ 0.73
CCDC28B-204ENST00000469003 SYNRGQ9UMZ2 1314 aa19.58■□□□□ 0.73
CCDC28B-204ENST00000469003 IGHDP01880 384 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 NUCB1Q02818 461 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 ACVR2BQ13705 512 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 PLEKHM2Q8IWE5 1019 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 DCAF4Q8WV16 495 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 AGBL1Q96MI9 1066 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 ABHD16BQ9H3Z7 469 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 OSBPL3Q9H4L5 887 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 RNF146Q9NTX7 359 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 TCP11L1Q9NUJ3 509 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 MTMR10Q9NXD2 777 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 PRR12Q9ULL5 1215 aa19.58■□□□□ 0.72
CCDC28B-204ENST00000469003 A0A1W2PQ45 241 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 A0A1W2PQY0 241 aa19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 DUSP11O75319 330 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 MFAP1P55081 439 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 RRP12Q5JTH9 1297 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 ARMCX2Q7L311 632 aa19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 RASGRP2Q7LDG7 609 aa19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 FAM133AQ8N9E0 248 aa19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 EXOC6Q8TAG9 804 aa19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 A1CFQ9NQ94 594 aaKnown RBP19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 PRDM5Q9NQX1 630 aaPredicted RBP19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 PDLIM7Q9NR12 457 aa19.57■□□□□ 0.72
CCDC28B-204ENST00000469003 POTEB2H3BUK9 544 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 TOP1P11387 765 aaKnown RBP19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 PCP11498 1178 aaKnown RBP19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 ALAS1P13196 640 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 SDSP20132 328 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 CCDC96Q2M329 555 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 CCDC174Q6PII3 467 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 KLHDC9Q8NEP7 349 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 TRERF1Q96PN7 1200 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 MTMR7Q9Y216 660 aa19.56■□□□□ 0.72
CCDC28B-204ENST00000469003 MOXD2PA6NHM9 499 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 HAND2P61296 217 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 CNTN2Q02246 1040 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 TLE2Q04725 743 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 CCDC144BQ3MJ40 725 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 AKNAD1Q5T1N1 836 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 BTNL9Q6UXG8 535 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 CCDC144CPQ8IYA2 1237 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 TMEM47Q9BQJ4 181 aa19.55■□□□□ 0.72
CCDC28B-204ENST00000469003 TRIM43BA6NCK2 446 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 ADCY6O43306 1168 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 CST5P28325 142 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 ACLYP53396 1101 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 SNAP25P60880 206 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 CCSAPQ6IQ19 270 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 MFSD6Q6ZSS7 791 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 SH3RF1Q7Z6J0 888 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 NUP133Q8WUM0 1156 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 TRIM43Q96BQ3 446 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 COL25A1Q9BXS0 654 aaPredicted RBP19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 KATNBL1Q9H079 304 aa19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 UPF3AQ9H1J1 476 aaKnown RBP19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 RANBP17Q9H2T7 1088 aaKnown RBP19.54■□□□□ 0.72
CCDC28B-204ENST00000469003 SOWAHBA6NEL2 793 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 ASB14A6NK59 587 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 ICAM1P05362 532 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 CLTBP09497 229 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 KCNA10Q16322 511 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 MUM1L1Q5H9M0 696 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 TTBK2Q6IQ55 1244 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 TBC1D10CQ8IV04 446 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 BADQ92934 168 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 TTC14Q96N46 770 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 RNF41Q9H4P4 317 aaPredicted RBP19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 SPC25Q9HBM1 224 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 STARD7Q9NQZ5 370 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 CCPG1Q9ULG6 757 aa19.53■□□□□ 0.72
CCDC28B-204ENST00000469003 LAMA4Q16363 1823 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms