RNA–Protein interactions for RNA: ENST00000468421.1

MSX1-202, Transcript of msh homeobox 1, humanhuman

TSL 3

Gene MSX1, Length 509 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-202ENST00000468421 NOM1Q5C9Z4 860 aaKnown RBP12.37□□□□□ -0.43
MSX1-202ENST00000468421 TREML2Q5T2D2 321 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 PRRT2Q7Z6L0 340 aaPredicted RBP12.37□□□□□ -0.43
MSX1-202ENST00000468421 CCDC148Q8NFR7 591 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 RBM46Q8TBY0 533 aaKnown RBP12.37□□□□□ -0.43
MSX1-202ENST00000468421 TNFRSF25Q93038 417 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 SLC10A4Q96EP9 437 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 WNK4Q96J92 1243 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 PPP1R9AQ9ULJ8 1098 aa12.37□□□□□ -0.43
MSX1-202ENST00000468421 ESYT2A0FGR8 921 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 MOGSQ13724 837 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 SAFBQ15424 915 aaKnown RBP eCLIP12.36□□□□□ -0.43
MSX1-202ENST00000468421 NFKBIBQ15653 356 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 EARS2Q5JPH6 523 aaKnown RBP12.36□□□□□ -0.43
MSX1-202ENST00000468421 PPP1R18Q6NYC8 613 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 CCDC174Q6PII3 467 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 GADL1Q6ZQY3 521 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 CATSPERGQ6ZRH7 1159 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 BRAPQ7Z569 592 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 FBXO11Q86XK2 927 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 DAGLBQ8NCG7 672 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 PROCA1Q8NCQ7 364 aaPredicted RBP12.36□□□□□ -0.43
MSX1-202ENST00000468421 RASGRP4Q8TDF6 673 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 ATG4CQ96DT6 458 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 GBP4Q96PP9 640 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 ZMYND12Q9H0C1 365 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 FOXP1Q9H334 677 aaPredicted RBP12.36□□□□□ -0.43
MSX1-202ENST00000468421 PCDHA4Q9UN74 947 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 CNPY2Q9Y2B0 182 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 ATP6V1DQ9Y5K8 247 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 MYH7BA7E2Y1 1941 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 ZNF536O15090 1300 aa12.36□□□□□ -0.43
MSX1-202ENST00000468421 SMCO2A6NFE2 343 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L15C9J2P7 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L13C9JLJ4 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L11C9JVI0 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L18D6R9N7 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L22D6RA61 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L17D6RBQ6 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L19D6RCP7 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L20D6RJB6 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 M0R2N6 131 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 CALML3P27482 149 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 USP17L24Q0WX57 530 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 GNL2Q13823 731 aaKnown RBP12.35□□□□□ -0.43
MSX1-202ENST00000468421 USH1GQ495M9 461 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 MYSM1Q5VVJ2 828 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 NOSTRINQ8IVI9 506 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 BLIDQ8IZY5 108 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 FAM177A1Q8N128 213 aaPredicted RBP12.35□□□□□ -0.43
MSX1-202ENST00000468421 PRPF38AQ8NAV1 312 aaKnown RBP12.35□□□□□ -0.43
MSX1-202ENST00000468421 CCDC12Q8WUD4 166 aaPredicted RBP12.35□□□□□ -0.43
MSX1-202ENST00000468421 AMNQ9BXJ7 453 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 FTOQ9C0B1 505 aaKnown RBP eCLIP12.35□□□□□ -0.43
MSX1-202ENST00000468421 GDPD2Q9HCC8 539 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 BRMS1Q9HCU9 246 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 PCDHA1Q9Y5I3 950 aa12.35□□□□□ -0.43
MSX1-202ENST00000468421 SPDYE16A6NNV3 312 aaPredicted RBP12.34□□□□□ -0.43
MSX1-202ENST00000468421 OPLAHO14841 1288 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 DSG3P32926 999 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 MCM4P33991 863 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 HUNKP57058 714 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 MKRN3Q13064 507 aaKnown RBP12.34□□□□□ -0.43
MSX1-202ENST00000468421 GPAT2Q6NUI2 795 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 SMC1BQ8NDV3 1235 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 REPS2Q8NFH8 660 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 USP28Q96RU2 1077 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 SLC38A10Q9HBR0 1119 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 C6orf50Q9HD87 102 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 TFIP11Q9UBB9 837 aaKnown RBP12.34□□□□□ -0.43
MSX1-202ENST00000468421 PCDHA6Q9UN73 950 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 PCDHA8Q9Y5H6 950 aa12.34□□□□□ -0.43
MSX1-202ENST00000468421 LCTP09848 1927 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 VWA5AO00534 786 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 WNT7AO00755 349 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 FIBPO43427 364 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 NCLP19338 710 aaKnown RBP12.33□□□□□ -0.44
MSX1-202ENST00000468421 TOB1P50616 345 aaPredicted RBP12.33□□□□□ -0.44
MSX1-202ENST00000468421 ADCY7P51828 1080 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 KRT85P78386 507 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 SNAPC2Q13487 334 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 COG2Q14746 738 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 UBE2SQ16763 222 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 SPRYD7Q5W111 196 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 GALNT17Q6IS24 598 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 POTEEQ6S8J3 1075 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 MS4A4AQ96JQ5 239 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 AGBL1Q96MI9 1066 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 RAVER2Q9HCJ3 691 aaKnown RBP12.33□□□□□ -0.44
MSX1-202ENST00000468421 RIC8AQ9NPQ8 531 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 TMEM260Q9NX78 707 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 ADAMTS5Q9UNA0 930 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 AGTPBP1Q9UPW5 1226 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 MYPNQ86TC9 1320 aa12.33□□□□□ -0.44
MSX1-202ENST00000468421 TOMM70O94826 608 aa12.32□□□□□ -0.44
MSX1-202ENST00000468421 ICAM1P05362 532 aa12.32□□□□□ -0.44
MSX1-202ENST00000468421 GNA11P29992 359 aa12.32□□□□□ -0.44
MSX1-202ENST00000468421 HOXA7P31268 230 aaPredicted RBP12.32□□□□□ -0.44
MSX1-202ENST00000468421 CLK2P49760 499 aaKnown RBP12.32□□□□□ -0.44
MSX1-202ENST00000468421 CEBPZQ03701 1054 aaKnown RBP12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms