RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 LENG1Q96BZ8 264 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-206ENST00000466591 TRERF1Q96PN7 1200 aa20.67■□□□□ 0.9
COL7A1-206ENST00000466591 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.67■□□□□ 0.9
COL7A1-206ENST00000466591 ORC4O43929 436 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 PQBP1O60828 265 aaKnown RBP20.66■□□□□ 0.9
COL7A1-206ENST00000466591 C6orf222P0C671 652 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-206ENST00000466591 ACVR2BQ13705 512 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 ALX1Q15699 326 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 TKFCQ3LXA3 575 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 LRIT3Q3SXY7 679 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 AGBL1Q96MI9 1066 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 ABHD16BQ9H3Z7 469 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 RNF41Q9H4P4 317 aaPredicted RBP20.66■□□□□ 0.9
COL7A1-206ENST00000466591 STARD7Q9NQZ5 370 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 CCPG1Q9ULG6 757 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 PHF24Q9UPV7 400 aa20.66■□□□□ 0.9
COL7A1-206ENST00000466591 DNAJC25-GNG10A0A024R161 153 aa20.65■□□□□ 0.9
COL7A1-206ENST00000466591 HSPD1P10809 573 aaKnown RBP20.65■□□□□ 0.9
COL7A1-206ENST00000466591 TOP1P11387 765 aaKnown RBP20.65■□□□□ 0.9
COL7A1-206ENST00000466591 MAMDC4Q6UXC1 1216 aa20.65■□□□□ 0.9
COL7A1-206ENST00000466591 ARMCX2Q7L311 632 aa20.65■□□□□ 0.9
COL7A1-206ENST00000466591 DEFB123Q8N688 67 aa20.65■□□□□ 0.9
COL7A1-206ENST00000466591 IL17RBQ9NRM6 502 aa20.65■□□□□ 0.9
COL7A1-206ENST00000466591 PRR12Q9ULL5 1215 aa20.65■□□□□ 0.9
COL7A1-206ENST00000466591 SYNRGQ9UMZ2 1314 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 A0A1W2PQ45 241 aaPredicted RBP20.64■□□□□ 0.89
COL7A1-206ENST00000466591 A0A1W2PQY0 241 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 HIP1O00291 1037 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 FOXP2O15409 715 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 SNAI1O95863 264 aaPredicted RBP20.64■□□□□ 0.89
COL7A1-206ENST00000466591 SNAP25P60880 206 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 TLE2Q04725 743 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 NSMFQ6X4W1 530 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 SMC5Q8IY18 1101 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 CCDC144CPQ8IYA2 1237 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 PCSK9Q8NBP7 692 aaKnown RBP20.64■□□□□ 0.89
COL7A1-206ENST00000466591 EXOC6Q8TAG9 804 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 GLT1D1Q96MS3 346 aa20.64■□□□□ 0.89
COL7A1-206ENST00000466591 FRMPD2Q68DX3 1309 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-206ENST00000466591 MOXD2PA6NHM9 499 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 ASB14A6NK59 587 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 DCDC2CA8MYV0 355 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 ZNF213O14771 459 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 PLA2G6O60733 806 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 DUSP11O75319 330 aaKnown RBP20.63■□□□□ 0.89
COL7A1-206ENST00000466591 CLTBP09497 229 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 PCP11498 1178 aaKnown RBP20.63■□□□□ 0.89
COL7A1-206ENST00000466591 SDSP20132 328 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 CCDC144BQ3MJ40 725 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 CWC27Q6UX04 472 aaKnown RBP20.63■□□□□ 0.89
COL7A1-206ENST00000466591 ZNF589Q86UQ0 364 aaPredicted RBP20.63■□□□□ 0.89
COL7A1-206ENST00000466591 TSEN34Q9BSV6 310 aaKnown RBP20.63■□□□□ 0.89
COL7A1-206ENST00000466591 GPCPD1Q9NPB8 672 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 TACC3Q9Y6A5 838 aa20.63■□□□□ 0.89
COL7A1-206ENST00000466591 ZMYM6O95789 1325 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 RAG1P15918 1043 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 ACLYP53396 1101 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 NUCB1Q02818 461 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 AKNAD1Q5T1N1 836 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 GPR153Q6NV75 609 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 ESR2Q92731 530 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 BADQ92934 168 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 A1CFQ9NQ94 594 aaKnown RBP20.62■□□□□ 0.89
COL7A1-206ENST00000466591 PDLIM7Q9NR12 457 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 TMEM39AQ9NV64 488 aa20.62■□□□□ 0.89
COL7A1-206ENST00000466591 SLC16A2P36021 539 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 CNTN2Q02246 1040 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 SNX17Q15036 470 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 KCNA10Q16322 511 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 GNASQ5JWF2 1037 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 SYDE2Q5VT97 1194 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 C1orf53Q5VUE5 145 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 TMEM47Q9BQJ4 181 aa20.61■□□□□ 0.89
COL7A1-206ENST00000466591 MROH7Q68CQ1 1323 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 ADAMTS4O75173 837 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 IGHDP01880 384 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 TNFAIP2Q03169 654 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 DHX30Q7L2E3 1194 aaKnown RBP eCLIP20.6■□□□□ 0.89
COL7A1-206ENST00000466591 RASGRP2Q7LDG7 609 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 IQCA1Q86XH1 822 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 PLEKHM2Q8IWE5 1019 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 MPHOSPH6Q99547 160 aaKnown RBP20.6■□□□□ 0.89
COL7A1-206ENST00000466591 AP5M1Q9H0R1 490 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 PNMA2Q9UL42 364 aa20.6■□□□□ 0.89
COL7A1-206ENST00000466591 ZNF536O15090 1300 aa20.59■□□□□ 0.89
COL7A1-206ENST00000466591 PTPDC1A2A3K4 754 aa20.59■□□□□ 0.89
COL7A1-206ENST00000466591 ICAM1P05362 532 aa20.59■□□□□ 0.89
COL7A1-206ENST00000466591 Q7L0L9 218 aa20.59■□□□□ 0.89
COL7A1-206ENST00000466591 TCP11L1Q9NUJ3 509 aa20.59■□□□□ 0.89
COL7A1-206ENST00000466591 ADD3Q9UEY8 706 aaKnown RBP20.59■□□□□ 0.89
COL7A1-206ENST00000466591 SMCHD1A6NHR9 2005 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 RANBP2P49792 3224 aaKnown RBP20.58■□□□□ 0.89
COL7A1-206ENST00000466591 FGRP09769 529 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 IMMTQ16891 758 aaKnown RBP20.58■□□□□ 0.89
COL7A1-206ENST00000466591 CCDC178Q5BJE1 867 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 TTBK2Q6IQ55 1244 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 EEPD1Q7L9B9 569 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 SH3RF1Q7Z6J0 888 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 FAM133AQ8N9E0 248 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 TTC14Q96N46 770 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms