RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 CRISPLD2Q9H0B8 497 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 SWAP70Q9UH65 585 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 BRPF3Q9ULD4 1205 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 MTMR6Q9Y217 621 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 RABGAP1Q9Y3P9 1069 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 SLC12A7Q9Y666 1083 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 TACC3Q9Y6A5 838 aa13.68□□□□□ -0.22
USP54-209ENST00000464635 STK36Q9NRP7 1315 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 ZNFX1Q9P2E3 1918 aaKnown RBP13.67□□□□□ -0.22
USP54-209ENST00000464635 CCDC69A6NI79 296 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 F13A1P00488 732 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 TFRCP02786 760 aaKnown RBP13.67□□□□□ -0.22
USP54-209ENST00000464635 PRKAR2AP13861 404 aaKnown RBP13.67□□□□□ -0.22
USP54-209ENST00000464635 NOVP48745 357 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 ICA1Q05084 483 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 CSPP1Q1MSJ5 1256 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 MAP3K21Q5TCX8 1036 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 LBX2Q6XYB7 198 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 C16orf86Q6ZW13 317 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 PLEKHH3Q7Z736 793 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 TMEM87AQ8NBN3 555 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 DPF3Q92784 378 aa13.67□□□□□ -0.22
USP54-209ENST00000464635 RPTORQ8N122 1335 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 CPLX1O14810 134 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 DDAH1O94760 285 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 CTDNEP1O95476 244 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 IFNAR1P17181 557 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 METAP2P50579 478 aaKnown RBP eCLIP13.66□□□□□ -0.22
USP54-209ENST00000464635 PKP1Q13835 747 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 WDR78Q5VTH9 848 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 CHST3Q7LGC8 479 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 CCAR1Q8IX12 1150 aaKnown RBP13.66□□□□□ -0.22
USP54-209ENST00000464635 SPICE1Q8N0Z3 855 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 FAM177A1Q8N128 213 aaPredicted RBP13.66□□□□□ -0.22
USP54-209ENST00000464635 FAM184AQ8NB25 1140 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 WASF1Q92558 559 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 PAWRQ96IZ0 340 aaKnown RBP13.66□□□□□ -0.22
USP54-209ENST00000464635 APBA2Q99767 749 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 LARP6Q9BRS8 491 aaKnown RBP13.66□□□□□ -0.22
USP54-209ENST00000464635 TANGO6Q9C0B7 1094 aa13.66□□□□□ -0.22
USP54-209ENST00000464635 HMX1Q9NP08 348 aaPredicted RBP13.66□□□□□ -0.22
USP54-209ENST00000464635 RBM28Q9NW13 759 aaKnown RBP13.66□□□□□ -0.22
USP54-209ENST00000464635 COLQQ9Y215 455 aaPredicted RBP13.66□□□□□ -0.22
USP54-209ENST00000464635 PLXNA1Q9UIW2 1896 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 GOLGA8BA8MQT2 603 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 XRCC5P13010 732 aaKnown RBP13.65□□□□□ -0.22
USP54-209ENST00000464635 RGS2P41220 211 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 MNX1P50219 401 aaPredicted RBP13.65□□□□□ -0.22
USP54-209ENST00000464635 CACNB2Q08289 660 aaPredicted RBP13.65□□□□□ -0.22
USP54-209ENST00000464635 NTRK3Q16288 839 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 ZNF444Q8N0Y2 327 aaPredicted RBP13.65□□□□□ -0.22
USP54-209ENST00000464635 STK11IPQ8N1F8 1099 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 HTATIP2Q9BUP3 242 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.65□□□□□ -0.22
USP54-209ENST00000464635 VCPKMTQ9H867 229 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 FLRT1Q9NZU1 646 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 TMX2Q9Y320 296 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 PLIN4Q96Q06 1357 aa13.65□□□□□ -0.22
USP54-209ENST00000464635 TNKSO95271 1327 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 TRIOBPQ9H2D6 2365 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 PTPDC1A2A3K4 754 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 EEF2P13639 858 aaKnown RBP13.64□□□□□ -0.23
USP54-209ENST00000464635 CCND3P30281 292 aaPredicted RBP13.64□□□□□ -0.23
USP54-209ENST00000464635 CCNA1P78396 465 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 MAP2K5Q13163 448 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 STK3Q13188 491 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 IFIT1BQ5T764 474 aaKnown RBP13.64□□□□□ -0.23
USP54-209ENST00000464635 NFXL1Q6ZNB6 911 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 CATIPQ7Z7H3 387 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 ENAHQ8N8S7 591 aaPredicted RBP13.64□□□□□ -0.23
USP54-209ENST00000464635 FANCBQ8NB91 859 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 NEDD1Q8NHV4 660 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 ATG4CQ96DT6 458 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 CCDC17Q96LX7 622 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 MOV10L1Q9BXT6 1211 aaKnown RBP13.64□□□□□ -0.23
USP54-209ENST00000464635 MKNK2Q9HBH9 465 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 ARHGEF10LQ9HCE6 1279 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 TOMM22Q9NS69 142 aa13.64□□□□□ -0.23
USP54-209ENST00000464635 RBM27Q9P2N5 1060 aaKnown RBP13.64□□□□□ -0.23
USP54-209ENST00000464635 SLC15A5A6NIM6 579 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 TSPY2A6NKD2 308 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 RANBP6O60518 1105 aaKnown RBP13.63□□□□□ -0.23
USP54-209ENST00000464635 FDPSP14324 419 aaKnown RBP13.63□□□□□ -0.23
USP54-209ENST00000464635 RASA1P20936 1047 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 PTPREP23469 700 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 SMARCA1P28370 1054 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 CCT2P78371 535 aaKnown RBP13.63□□□□□ -0.23
USP54-209ENST00000464635 ATP2B2Q01814 1243 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 TROAPQ12815 778 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 GRB14Q14449 540 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 COG2Q14746 738 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 RRP12Q5JTH9 1297 aaKnown RBP13.63□□□□□ -0.23
USP54-209ENST00000464635 SAMD1Q6SPF0 538 aaPredicted RBP13.63□□□□□ -0.23
USP54-209ENST00000464635 CHRDL2Q6WN34 429 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 ZNF654Q8IZM8 581 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 NPLOC4Q8TAT6 608 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 LPAR1Q92633 364 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 FAM217BQ9NTX9 383 aaPredicted RBP13.63□□□□□ -0.23
USP54-209ENST00000464635 FBXO28Q9NVF7 368 aa13.63□□□□□ -0.23
USP54-209ENST00000464635 TCHHQ07283 1943 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms