RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 KCTD1Q719H9 257 aa8.59□□□□□ -1.03
PTPRF-210ENST00000463041 RNF180Q86T96 592 aa8.59□□□□□ -1.03
PTPRF-210ENST00000463041 TMEM47Q9BQJ4 181 aa8.59□□□□□ -1.03
PTPRF-210ENST00000463041 CTNNA3Q9UI47 895 aa8.59□□□□□ -1.03
PTPRF-210ENST00000463041 FAM184BQ9ULE4 1060 aa8.59□□□□□ -1.03
PTPRF-210ENST00000463041 PRR12Q9ULL5 1215 aa8.59□□□□□ -1.03
PTPRF-210ENST00000463041 ISY1Q9ULR0 285 aaKnown RBP8.59□□□□□ -1.03
PTPRF-210ENST00000463041 ZMYND8Q9ULU4 1186 aaPredicted RBP8.59□□□□□ -1.03
PTPRF-210ENST00000463041 AKR1A1P14550 325 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 TAL1P17542 331 aaPredicted RBP8.58□□□□□ -1.04
PTPRF-210ENST00000463041 SYN1P17600 705 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 ATN1P54259 1190 aaPredicted RBP8.58□□□□□ -1.04
PTPRF-210ENST00000463041 HAND2P61296 217 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 C1orf53Q5VUE5 145 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 DGKHQ86XP1 1220 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 ESR2Q92731 530 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 AGBL1Q96MI9 1066 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 TRERF1Q96PN7 1200 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 TSEN34Q9BSV6 310 aaKnown RBP8.58□□□□□ -1.04
PTPRF-210ENST00000463041 DSCC1Q9BVC3 393 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 ABHD16BQ9H3Z7 469 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 ACAD9Q9H845 621 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 XPNPEP3Q9NQH7 507 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 PNMA2Q9UL42 364 aa8.58□□□□□ -1.04
PTPRF-210ENST00000463041 ZNF536O15090 1300 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 LAMA2P24043 3122 aaKnown RBP8.57□□□□□ -1.04
PTPRF-210ENST00000463041 ASB14A6NK59 587 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 POTEB2H3BUK9 544 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 DUSP11O75319 330 aaKnown RBP8.57□□□□□ -1.04
PTPRF-210ENST00000463041 MYCNP04198 464 aaPredicted RBP8.57□□□□□ -1.04
PTPRF-210ENST00000463041 ALAS1P13196 640 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 ADCYAP1R1P41586 468 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 MAGEA10P43363 369 aaPredicted RBP8.57□□□□□ -1.04
PTPRF-210ENST00000463041 ACVR2BQ13705 512 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 CCDC96Q2M329 555 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 IQCA1Q86XH1 822 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 FAM133AQ8N9E0 248 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 ANKS1AQ92625 1134 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 CHMP4CQ96CF2 233 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 LBHD1Q9BQE6 289 aaPredicted RBP8.57□□□□□ -1.04
PTPRF-210ENST00000463041 RNF146Q9NTX7 359 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.57□□□□□ -1.04
PTPRF-210ENST00000463041 PRKAG2Q9UGJ0 569 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 PHF24Q9UPV7 400 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 LAMA3Q16787 3333 aa8.57□□□□□ -1.04
PTPRF-210ENST00000463041 PGK1P00558 417 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 ICAM1P05362 532 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 PDHBP11177 359 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 PDE4AP27815 886 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 RTP1P59025 263 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 CNTN2Q02246 1040 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 SNX17Q15036 470 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 IMMTQ16891 758 aaKnown RBP8.56□□□□□ -1.04
PTPRF-210ENST00000463041 GPATCH4Q5T3I0 446 aaKnown RBP8.56□□□□□ -1.04
PTPRF-210ENST00000463041 TTC22Q5TAA0 569 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 SYDE2Q5VT97 1194 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 TTBK2Q6IQ55 1244 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 CCDC174Q6PII3 467 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 KLHDC9Q8NEP7 349 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 NUP133Q8WUM0 1156 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 RUFY2Q8WXA3 655 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 FERMT2Q96AC1 680 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 FGD4Q96M96 766 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 UBE2OQ9C0C9 1292 aaKnown RBP8.56□□□□□ -1.04
PTPRF-210ENST00000463041 RANBP17Q9H2T7 1088 aaKnown RBP8.56□□□□□ -1.04
PTPRF-210ENST00000463041 CNNM2Q9H8M5 875 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 SPC25Q9HBM1 224 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 GPCPD1Q9NPB8 672 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 A1CFQ9NQ94 594 aaKnown RBP8.56□□□□□ -1.04
PTPRF-210ENST00000463041 HOMER2Q9NSB8 354 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 CYP39A1Q9NYL5 469 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 CCPG1Q9ULG6 757 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 MTMR7Q9Y216 660 aa8.56□□□□□ -1.04
PTPRF-210ENST00000463041 MYH6P13533 1939 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 LOC102724159A0A0B4J2E5 919 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 SOWAHBA6NEL2 793 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 MOXD2PA6NHM9 499 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 ADAMTS4O75173 837 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 SNHG28P0DPA3 235 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 SLC16A2P36021 539 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 SNAP25P60880 206 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 ZNF543Q08ER8 600 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 PWP2Q15269 919 aaKnown RBP8.55□□□□□ -1.04
PTPRF-210ENST00000463041 KCNA10Q16322 511 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 CCDC144BQ3MJ40 725 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 LRIT3Q3SXY7 679 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 IQSEC1Q6DN90 963 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 GPR153Q6NV75 609 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 ARMCX2Q7L311 632 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 TBC1D10CQ8IV04 446 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 CCDC144CPQ8IYA2 1237 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 TDHQ8IZJ6 230 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 PCSK9Q8NBP7 692 aaKnown RBP8.55□□□□□ -1.04
PTPRF-210ENST00000463041 KRT23Q9C075 422 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 MAF1Q9H063 256 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 ZSWIM5Q9P217 1185 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 ZHX1Q9UKY1 873 aaPredicted RBP8.55□□□□□ -1.04
PTPRF-210ENST00000463041 ATP11BQ9Y2G3 1177 aa8.55□□□□□ -1.04
PTPRF-210ENST00000463041 BAZ2BQ9UIF8 2168 aaKnown RBP8.54□□□□□ -1.04
PTPRF-210ENST00000463041 B4E1Z4 1266 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms