RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 TXNRD3Q86VQ6 643 aa13.97□□□□□ -0.17
HDAC4-208ENST00000463007 ESR2Q92731 530 aa13.97□□□□□ -0.17
HDAC4-208ENST00000463007 TNFRSF25Q93038 417 aa13.97□□□□□ -0.17
HDAC4-208ENST00000463007 FAM47AQ5JRC9 791 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 KANK3Q6NY19 840 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 RASGRP2Q7LDG7 609 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 SLC51AQ86UW1 340 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 ARHGEF1Q92888 912 aaKnown RBP13.96□□□□□ -0.17
HDAC4-208ENST00000463007 EPN1Q9Y6I3 576 aaPredicted RBP13.96□□□□□ -0.17
HDAC4-208ENST00000463007 TTC26A0AVF1 554 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 COPB1P53618 953 aaKnown RBP13.96□□□□□ -0.17
HDAC4-208ENST00000463007 SLC7A5Q01650 507 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 ANKRD20A12PQ8NF67 263 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 C8orf37Q96NL8 207 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 PHF20Q9BVI0 1012 aa13.96□□□□□ -0.17
HDAC4-208ENST00000463007 ROBO3Q96MS0 1386 aa13.96□□□□□ -0.18
HDAC4-208ENST00000463007 CCDC196A0A1B0GTZ2 297 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 EIF3CLB5ME19 914 aaKnown RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 ERCC5P28715 1186 aaPredicted RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 KRT2P35908 639 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 NLRP5P59047 1200 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 C2orf54Q08AI8 447 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 SBK1Q52WX2 424 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 MUM1L1Q5H9M0 696 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 NT5DC1Q5TFE4 455 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 ANKRD13CQ8N6S4 541 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 EIF3CQ99613 913 aaKnown RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 CRACR2AQ9BSW2 395 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 ANKRD2Q9GZV1 360 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 DCP1AQ9NPI6 582 aaPredicted RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 XBP1P17861 261 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 TRIM21P19474 475 aaKnown RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 PIP4K2BP78356 416 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 ENOX2Q16206 610 aaKnown RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 CYP26C1Q6V0L0 522 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 BICDL1Q6ZP65 573 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 MICALL1Q8N3F8 863 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 ZNF579Q8NAF0 562 aaKnown RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 NLRP3Q96P20 1036 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 SETDB2Q96T68 719 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 TTF2Q9UNY4 1162 aaKnown RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 GNPATO15228 680 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 MYBL2P10244 700 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 PRDX5P30044 214 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 GGCXP38435 758 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 TTC38Q5R3I4 469 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 IFIT1BQ5T764 474 aaKnown RBP13.95□□□□□ -0.18
HDAC4-208ENST00000463007 LRRC31Q6UY01 552 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 CTAGE1Q96RT6 745 aa13.95□□□□□ -0.18
HDAC4-208ENST00000463007 PRPF3O43395 683 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 RNASE9P60153 205 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 PAK1Q13153 545 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 KRT26Q7Z3Y9 468 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 TMTC1Q8IUR5 882 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 IPO4Q8TEX9 1081 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 GPKOWQ92917 476 aaPredicted RBP eCLIP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 AGPAT5Q9NUQ2 364 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 EHD2Q9NZN4 543 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 NDUFA10O95299 355 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 HIBADHP31937 336 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 ARHGAP25P42331 645 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 PRCPP42785 496 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 LIG3P49916 1009 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 NAP1L1P55209 391 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 EZH2Q15910 746 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 NBPF5PQ86XG9 351 aaPredicted RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 DHX37Q8IY37 1157 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 SPATA20Q8TB22 786 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 TRIM47Q96LD4 638 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 UIMC1Q96RL1 719 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 LUC7L2Q9Y383 392 aaKnown RBP13.94□□□□□ -0.18
HDAC4-208ENST00000463007 CNTNAP5Q8WYK1 1306 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 MYH10P35580 1976 aa13.94□□□□□ -0.18
HDAC4-208ENST00000463007 B4DLN1 442 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 ONECUT3O60422 494 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-208ENST00000463007 DDAH1O94760 285 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 PMS1P54277 932 aaKnown RBP13.93□□□□□ -0.18
HDAC4-208ENST00000463007 C15orf52Q6ZUT6 534 aaKnown RBP13.93□□□□□ -0.18
HDAC4-208ENST00000463007 PACS2Q86VP3 889 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 AFAP1L1Q8TED9 768 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 LACRTQ9GZZ8 138 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 TSPYL1Q9H0U9 437 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 SAMM50Q9Y512 469 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 XDHP47989 1333 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 CCT5P48643 541 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 ATP2B2Q01814 1243 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 RCSD1Q6JBY9 416 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 TRIML1Q8N9V2 468 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 HPS3Q969F9 1004 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 NGLY1Q96IV0 654 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 CCNL1Q9UK58 526 aaPredicted RBP13.93□□□□□ -0.18
HDAC4-208ENST00000463007 SAR1BQ9Y6B6 198 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 USP17L12C9JPN9 530 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 USP17L21D6R901 530 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 IPO7O95373 1038 aaKnown RBP13.93□□□□□ -0.18
HDAC4-208ENST00000463007 IDEP14735 1019 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 TCP11X2Q5H9J9 407 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 TPTE2Q6XPS3 522 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 TMTC3Q6ZXV5 915 aa13.93□□□□□ -0.18
HDAC4-208ENST00000463007 JAKMIP2Q96AA8 810 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms