RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	PKP1	Q13835	747 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	UQCRHL	A0A096LP55	91 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	SNAP23	O00161	211 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	NOP56	O00567	594 aa	Known RBP	13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	UQCRH	P07919	91 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	STX17	P56962	302 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	KIF5A	Q12840	1032 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	CEP135	Q66GS9	1140 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	TCHP	Q9BT92	498 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	DAGLA	Q9Y4D2	1042 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	PEAK1	Q9H792	1746 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	ZBTB5	O15062	677 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	NR1I2	O75469	434 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	GAP43	P17677	238 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	DNM2	P50570	870 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	TGFB2	P61812	414 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	STRN3	Q13033	797 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	AGBL3	Q8NEM8	1001 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	MRFAP1L1	Q96HT8	127 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	JPH2	Q9BR39	696 aa	Predicted RBP	13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	SETD1A	O15047	1707 aa	Known RBP	13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	PDE4C	Q08493	712 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	AOC3	Q16853	763 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	PIGS	Q96S52	555 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	OSBPL5	Q9H0X9	879 aa	Predicted RBP	13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	METTL14	Q9HCE5	456 aa	Known RBP	13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	PODXL2	Q9NZ53	605 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	FBXO40	Q9UH90	709 aa		13.12	□□□□□ -0.31
RBM39-223	ENST00000463004	CYP2D7	A0A087X1C5	515 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	TMTC1	Q8IUR5	882 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	FBXL16	Q8N461	479 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	VTI1A	Q96AJ9	217 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	LARS	Q9P2J5	1176 aa	Known RBP	13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	MYOCD	Q8IZQ8	938 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	CMTR1	Q8N1G2	835 aa	Known RBP	13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	NYAP2	Q9P242	653 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	GNG11	P61952	73 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	FKBP1A	P62942	108 aa	Known RBP	13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	PSMD2	Q13200	908 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	PRR16	Q569H4	304 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	SPATA1	Q5VX52	437 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	GPT2	Q8TD30	523 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	SMCR8	Q8TEV9	937 aa	Predicted RBP	13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	NELFB	Q8WX92	580 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	DHTKD1	Q96HY7	919 aa	Predicted RBP	13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	ABCB11	O95342	1321 aa		13.11	□□□□□ -0.31
RBM39-223	ENST00000463004	SET	Q01105	290 aa	Predicted RBP	13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	CDC37	Q16543	378 aa	Predicted RBP	13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	C16orf86	Q6ZW13	317 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	IGSF22	Q8N9C0	903 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	SYMPK	Q92797	1274 aa	Known RBP	13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	PLIN2	Q99541	437 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	USP17L5	A8MUK1	530 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	N4BP1	O75113	896 aa	Known RBP	13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	PTPRE	P23469	700 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	NDUFA8	P51970	172 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	DDX12P	Q92771	950 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	BAG1	Q99933	345 aa	Predicted RBP	13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	PNMA3	Q9UL41	463 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	USP17L2	Q6R6M4	530 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	ATP6V0A1	Q93050	837 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	SELENOO	Q9BVL4	669 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	RIC8A	Q9NPQ8	531 aa		13.1	□□□□□ -0.31
RBM39-223	ENST00000463004	TEC	P42680	631 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	TMCO3	Q6UWJ1	677 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	TBCK	Q8TEA7	893 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	C16orf45	Q96MC5	204 aa	Predicted RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	GPR101	Q96P66	508 aa	Predicted RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	FAM205A	Q6ZU69	1335 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	ARHGAP6	O43182	974 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	USP8	P40818	1118 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	CYP26C1	Q6V0L0	522 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	IGDCC4	Q8TDY8	1250 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	TRMT1	Q9NXH9	659 aa	Known RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	CGN	Q9P2M7	1197 aa	Known RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	FLT1	P17948	1338 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	RPN1	P04843	607 aa	Known RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	SRGN	P10124	158 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	CYP2D6	P10635	497 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	IL1R1	P14778	569 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	STOX1	Q6ZVD7	989 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	GPBP1	Q86WP2	473 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	COL23A1	Q86Y22	540 aa	Predicted RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	FAM151A	Q8WW52	585 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	KIFAP3	Q92845	792 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	PPP1R9B	Q96SB3	815 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	CSRNP2	Q9H175	543 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	TDRD3	Q9H7E2	651 aa	Known RBP	13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	BARHL2	Q9NY43	387 aa		13.09	□□□□□ -0.31
RBM39-223	ENST00000463004	CHMP2A	O43633	222 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	GH2	P01242	217 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	CDC25B	P30305	580 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	ALCAM	Q13740	583 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	FAM160B1	Q5W0V3	765 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	MYCT1	Q8N699	235 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	CEP112	Q8N8E3	955 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	NEK9	Q8TD19	979 aa		13.08	□□□□□ -0.31
RBM39-223	ENST00000463004	FNBP1	Q96RU3	617 aa		13.08	□□□□□ -0.31

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