RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	ELP1	O95163	1332 aa		13.34	□□□□□ -0.27
PTPN7-204	ENST00000462815	ASGR1	P07306	291 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	GRIN2C	Q14957	1233 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	CCDC144B	Q3MJ40	725 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	ARMCX2	Q7L311	632 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	FAM126B	Q8IXS8	530 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	IFNL3	Q8IZI9	196 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	CPXCR1	Q8N123	301 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	FAM133A	Q8N9E0	248 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	USP38	Q8NB14	1042 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	CHST13	Q8NET6	341 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	NEDD1	Q8NHV4	660 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	PI4K2B	Q8TCG2	481 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	NUP133	Q8WUM0	1156 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	KIFC2	Q96AC6	838 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	ABHD16B	Q9H3Z7	469 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	FEM1B	Q9UK73	627 aa		13.33	□□□□□ -0.28
PTPN7-204	ENST00000462815	TTC28	Q96AY4	2481 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	SOWAHB	A6NEL2	793 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	PATL2	C9JE40	543 aa	Known RBP	13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	ZBED4	O75132	1171 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	TTLL1	O95922	423 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	CD4	P01730	458 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	ZFY	P08048	801 aa	Predicted RBP	13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	FOSL2	P15408	326 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	GNAT2	P19087	354 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	DNAJB2	P25686	324 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	NOV	P48745	357 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	CNTN2	Q02246	1040 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	TMEM240	Q5SV17	173 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	MFSD5	Q6N075	450 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	RASGRP2	Q7LDG7	609 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	CCDC144CP	Q8IYA2	1237 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	SLC43A3	Q8NBI5	491 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	DDX11	Q96FC9	970 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	GNE	Q9Y223	722 aa	Known RBP	13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	SALL3	Q9BXA9	1300 aa		13.32	□□□□□ -0.28
PTPN7-204	ENST00000462815	DCDC2C	A8MYV0	355 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	ARVCF	O00192	962 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	C6orf222	P0C671	652 aa	Predicted RBP	13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	BMP3	P12645	472 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	PTGS1	P23219	599 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	TDO2	P48775	406 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	SLFN13	Q68D06	897 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	ANKRD35	Q8N283	1001 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	OTUD7A	Q8TE49	926 aa	Predicted RBP	13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	VWCE	Q96DN2	955 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	GMCL1	Q96IK5	515 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	A1CF	Q9NQ94	594 aa	Known RBP	13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	FBXO40	Q9UH90	709 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	DDX49	Q9Y6V7	483 aa	Known RBP	13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815	GRIN2D	O15399	1336 aa		13.31	□□□□□ -0.28
PTPN7-204	ENST00000462815		A0A0U1RQG5	324 aa	Predicted RBP	13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	PLA2G6	O60733	806 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	PBX2	P40425	430 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	ZMYM1	Q5SVZ6	1142 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	ZNF444	Q8N0Y2	327 aa	Predicted RBP	13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	PCSK9	Q8NBP7	692 aa	Known RBP	13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	AGBL1	Q96MI9	1066 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	GLT1D1	Q96MS3	346 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	IL17RB	Q9NRM6	502 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	MROH7	Q68CQ1	1323 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	TTC41P	Q6P2S7	1318 aa		13.3	□□□□□ -0.28
PTPN7-204	ENST00000462815	TMEM232	C9JQI7	657 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	FDX1	P10109	184 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	CSF2RA	P15509	400 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	SLC4A3	P48751	1232 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	BEX3	Q00994	111 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	TFAP4	Q01664	338 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	PPARA	Q07869	468 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	TMEM63B	Q5T3F8	832 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	PBX4	Q9BYU1	374 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	ZNF576	Q9H609	170 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	ACAD9	Q9H845	621 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	HOMER2	Q9NSB8	354 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	UMODL1	Q5DID0	1318 aa		13.29	□□□□□ -0.28
PTPN7-204	ENST00000462815	GRXCR1	A8MXD5	290 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	STAT2	P52630	851 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	PPIG	Q13427	754 aa	Known RBP eCLIP	13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	MUM1L1	Q5H9M0	696 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	GNAS	Q5JWF2	1037 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	TAPT1	Q6NXT6	567 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	MORC4	Q8TE76	937 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	STAG1	Q8WVM7	1258 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	TIFA	Q96CG3	184 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	GPATCH3	Q96I76	525 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	ZNF287	Q9HBT7	754 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	INCENP	Q9NQS7	918 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	RNF146	Q9NTX7	359 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	PCDHB15	Q9Y5E8	787 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	MYO9B	Q13459	2157 aa		13.28	□□□□□ -0.28
PTPN7-204	ENST00000462815	GBF1	Q92538	1859 aa		13.27	□□□□□ -0.28
PTPN7-204	ENST00000462815	NMT2	O60551	498 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	APP	P05067	770 aa		13.27	□□□□□ -0.29
PTPN7-204	ENST00000462815	TSPY3	P0CV98	308 aa		13.27	□□□□□ -0.29

Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms