RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 CHST13Q8NET6 341 aa19.13■□□□□ 0.65
COL7A1-204ENST00000462475 STARD7Q9NQZ5 370 aa19.13■□□□□ 0.65
COL7A1-204ENST00000462475 DUSP11O75319 330 aaKnown RBP19.12■□□□□ 0.65
COL7A1-204ENST00000462475 STAT2P52630 851 aa19.12■□□□□ 0.65
COL7A1-204ENST00000462475 CTDSPL2Q05D32 466 aa19.12■□□□□ 0.65
COL7A1-204ENST00000462475 KCNA10Q16322 511 aa19.12■□□□□ 0.65
COL7A1-204ENST00000462475 ARMCX2Q7L311 632 aa19.12■□□□□ 0.65
COL7A1-204ENST00000462475 RASGRP2Q7LDG7 609 aa19.12■□□□□ 0.65
COL7A1-204ENST00000462475 GMCL1Q96IK5 515 aa19.12■□□□□ 0.65
COL7A1-204ENST00000462475 INCENPQ9NQS7 918 aa19.12■□□□□ 0.65
COL7A1-204ENST00000462475 CUL9Q8IWT3 2517 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 ZNF536O15090 1300 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 MOXD2PA6NHM9 499 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 NMT2O60551 498 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 RAG1P15918 1043 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 MCCP23508 829 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 SLC1A4P43007 532 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 RRP1P56182 461 aaKnown RBP19.11■□□□□ 0.65
COL7A1-204ENST00000462475 CNTN2Q02246 1040 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 FAAP100Q0VG06 881 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 IKQ13123 557 aaPredicted RBP19.11■□□□□ 0.65
COL7A1-204ENST00000462475 CCDC144BQ3MJ40 725 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 VPS53Q5VIR6 699 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 ANKRD33Q7Z3H0 272 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 AGBL1Q96MI9 1066 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 KATNBL1Q9H079 304 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 ACAD9Q9H845 621 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 TMEM39AQ9NV64 488 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 STX8Q9UNK0 236 aa19.11■□□□□ 0.65
COL7A1-204ENST00000462475 C6orf222P0C671 652 aaPredicted RBP19.1■□□□□ 0.65
COL7A1-204ENST00000462475 FDX1P10109 184 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 CST5P28325 142 aaPredicted RBP19.1■□□□□ 0.65
COL7A1-204ENST00000462475 KCTD1Q719H9 257 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 FAM160B2Q86V87 743 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 CCDC144CPQ8IYA2 1237 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 NUP133Q8WUM0 1156 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 STAG1Q8WVM7 1258 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 TOX2Q96NM4 488 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 ABHD16BQ9H3Z7 469 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 A1CFQ9NQ94 594 aaKnown RBP19.1■□□□□ 0.65
COL7A1-204ENST00000462475 IL17RBQ9NRM6 502 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 RNF146Q9NTX7 359 aa19.1■□□□□ 0.65
COL7A1-204ENST00000462475 TSPY2A6NKD2 308 aa19.09■□□□□ 0.65
COL7A1-204ENST00000462475 SNAP25P60880 206 aa19.09■□□□□ 0.65
COL7A1-204ENST00000462475 SMAD3P84022 425 aaKnown RBP19.09■□□□□ 0.65
COL7A1-204ENST00000462475 FAM133AQ8N9E0 248 aa19.09■□□□□ 0.65
COL7A1-204ENST00000462475 CHURC1Q8WUH1 139 aa19.09■□□□□ 0.65
COL7A1-204ENST00000462475 RNPC3Q96LT9 517 aaKnown RBP19.09■□□□□ 0.65
COL7A1-204ENST00000462475 UPF3AQ9H1J1 476 aaKnown RBP19.09■□□□□ 0.65
COL7A1-204ENST00000462475 SOWAHBA6NEL2 793 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 DCDC2CA8MYV0 355 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 GJA9P57773 515 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 FPGSQ05932 587 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 ANKRD45Q5TZF3 282 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 GLT1D1Q96MS3 346 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 CRBNQ96SW2 442 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 CDX2Q99626 313 aaPredicted RBP19.08■□□□□ 0.64
COL7A1-204ENST00000462475 TTYH1Q9H313 450 aaPredicted RBP19.08■□□□□ 0.64
COL7A1-204ENST00000462475 SEMA6BQ9H3T3 888 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 TBX21Q9UL17 535 aa19.08■□□□□ 0.64
COL7A1-204ENST00000462475 DDX49Q9Y6V7 483 aaKnown RBP19.08■□□□□ 0.64
COL7A1-204ENST00000462475 ASTN1O14525 1302 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 MCM3APO60318 1980 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.07■□□□□ 0.64
COL7A1-204ENST00000462475 CTAGE5O15320 804 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 PLA2G6O60733 806 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 ASGR1P07306 291 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 ALAS1P13196 640 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 PPP4R3BQ5MIZ7 849 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 CCDC174Q6PII3 467 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 PCSK9Q8NBP7 692 aaKnown RBP19.07■□□□□ 0.64
COL7A1-204ENST00000462475 EVI5LQ96CN4 794 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 TRERF1Q96PN7 1200 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 SPC25Q9HBM1 224 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 ANAPC4Q9UJX5 808 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 PRR12Q9ULL5 1215 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 MTMR7Q9Y216 660 aa19.07■□□□□ 0.64
COL7A1-204ENST00000462475 ELP1O95163 1332 aa19.06■□□□□ 0.64
COL7A1-204ENST00000462475 RANBP6O60518 1105 aaKnown RBP19.06■□□□□ 0.64
COL7A1-204ENST00000462475 CDK7P50613 346 aa19.06■□□□□ 0.64
COL7A1-204ENST00000462475 MUM1L1Q5H9M0 696 aa19.06■□□□□ 0.64
COL7A1-204ENST00000462475 GNASQ5JWF2 1037 aa19.06■□□□□ 0.64
COL7A1-204ENST00000462475 RCSD1Q6JBY9 416 aa19.06■□□□□ 0.64
COL7A1-204ENST00000462475 ZBTB47Q9UFB7 747 aaPredicted RBP19.06■□□□□ 0.64
COL7A1-204ENST00000462475 VCANP13611 3396 aa19.06■□□□□ 0.64
COL7A1-204ENST00000462475 A0A0D9SFI3 127 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 ORC4O43929 436 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 PTGS1P23219 599 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 NOVP48745 357 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 PDE1AP54750 535 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 BEX3Q00994 111 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 TKFCQ3LXA3 575 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.05■□□□□ 0.64
COL7A1-204ENST00000462475 VTI1AQ96AJ9 217 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 FAM227BQ96M60 508 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 LRRC37A2A6NM11 1700 aa19.05■□□□□ 0.64
COL7A1-204ENST00000462475 PRUNE2Q8WUY3 3088 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 MROH7Q68CQ1 1323 aa19.04■□□□□ 0.64
COL7A1-204ENST00000462475 A0A0U1RQG5 324 aaPredicted RBP19.04■□□□□ 0.64
COL7A1-204ENST00000462475 TIMP1P01033 207 aa19.04■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms