RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ARFGEF2Q9Y6D5 1785 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 OPA1O60313 960 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 IFIT5Q13325 482 aaKnown RBP13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CCDC181Q5TID7 509 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CCDC70Q6NSX1 233 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 AMOTL1Q8IY63 956 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 IFNL2Q8IZJ0 200 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 GREM2Q9H772 168 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CNNM1Q9NRU3 951 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CYP2D7A0A087X1C5 515 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CCDC196A0A1B0GTZ2 297 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 E7EVH7 732 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 EPHB6O15197 1021 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 SPAG1Q07617 926 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 TOM1L2Q6ZVM7 507 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CCDC13Q8IYE1 715 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 OR2W6PQ8NHA6 318 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 RASSF8Q8NHQ8 419 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 ZNF507Q8TCN5 953 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 CABLES1Q8TDN4 633 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 DDX17Q92841 729 aaKnown RBP13.06□□□□□ -0.32
CPSF3-202ENST00000460593 HPS3Q969F9 1004 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 SCLT1Q96NL6 688 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 OSBPL9Q96SU4 736 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 SLC24A3Q9HC58 644 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 KLC4Q9NSK0 619 aa13.06□□□□□ -0.32
CPSF3-202ENST00000460593 TCRBV5S4A2TA0A5A2 114 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 GSG1L2A8MUP6 293 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 OPLAHO14841 1288 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 CYLC1P35663 651 aaPredicted RBP13.05□□□□□ -0.32
CPSF3-202ENST00000460593 ZNF658Q5TYW1 1059 aaPredicted RBP13.05□□□□□ -0.32
CPSF3-202ENST00000460593 CCT8L2Q96SF2 557 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 STIM2Q9P246 746 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 IQSEC3Q9UPP2 1182 aaPredicted RBP13.05□□□□□ -0.32
CPSF3-202ENST00000460593 TBC1D2BQ9UPU7 963 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 WDR17Q8IZU2 1322 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 ERICH2A1L162 156 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 RDXP35241 583 aaKnown RBP13.05□□□□□ -0.32
CPSF3-202ENST00000460593 GUCY2DQ02846 1103 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 TBC1D8BQ0IIM8 1120 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 CCDC40Q4G0X9 1142 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 CHADLQ6NUI6 762 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 C8orf74Q6P047 294 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 RASGRP4Q8TDF6 673 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 SDR42E1Q8WUS8 393 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 RPGRIP1Q96KN7 1286 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 EPB41L5Q9HCM4 733 aa13.05□□□□□ -0.32
CPSF3-202ENST00000460593 PACSIN2Q9UNF0 486 aaPredicted RBP13.05□□□□□ -0.32
CPSF3-202ENST00000460593 DDX60Q8IY21 1712 aaKnown RBP13.05□□□□□ -0.32
CPSF3-202ENST00000460593 FSBPO95073 299 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 PAX7P23759 505 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 EVX2Q03828 476 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 B4GALNT4Q76KP1 1039 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 MMGT1Q8N4V1 131 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 CCDC42Q96M95 316 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 SLC40A1Q9NP59 571 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 FAM207AQ9NSI2 230 aaPredicted RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 ZNHIT6Q9NWK9 470 aaKnown RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 SIPA1L3O60292 1781 aaPredicted RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 PATL2C9JE40 543 aaKnown RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 GTPBP6O43824 516 aaPredicted RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 SKAP2O75563 359 aaPredicted RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 EPHB4P54760 987 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 SKOR1P84550 965 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 CFAP58Q5T655 872 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 NLRP14Q86W24 1093 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 C2CD5Q86YS7 1000 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 TTLL11Q8NHH1 800 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 TUBGCP2Q9BSJ2 902 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 HAUS2Q9NVX0 235 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 MEGF6O75095 1541 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 RPSAP08865 295 aaKnown RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 NR1D1P20393 614 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 ITGA6P23229 1130 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 PPP2R5AQ15172 486 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 PTGISQ16647 500 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 MAATS1Q7Z4T9 603 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 ANKLE2Q86XL3 938 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 MYCBPAPQ8TBZ2 947 aa13.04□□□□□ -0.32
CPSF3-202ENST00000460593 IFIH1Q9BYX4 1025 aaKnown RBP13.04□□□□□ -0.32
CPSF3-202ENST00000460593 TMOD1P28289 359 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 ELF1P32519 619 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 STAT6P42226 847 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 VAV2P52735 878 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 PIK3R5Q8WYR1 880 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 PHF20Q9BVI0 1012 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 EPN3Q9H201 632 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 MAGEC2Q9UBF1 373 aaPredicted RBP13.03□□□□□ -0.32
CPSF3-202ENST00000460593 TNKSO95271 1327 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 UBE3CQ15386 1083 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 HLFQ16534 295 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 QPCTQ16769 361 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 CEP85LQ5SZL2 805 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 ADSSL1Q8N142 457 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 EHBP1Q8NDI1 1231 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 CCDC114Q96M63 670 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 BCCIPQ9P287 314 aaKnown RBP eCLIP13.03□□□□□ -0.32
CPSF3-202ENST00000460593 MCM8Q9UJA3 840 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 ODF2LQ9ULJ1 636 aa13.03□□□□□ -0.32
CPSF3-202ENST00000460593 NUTM2BA6NNL0 878 aaPredicted RBP13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms