RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CTNND2Q9UQB3 1225 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 PPP2R2CQ9Y2T4 447 aa17.02■□□□□ 0.31
LDLR-202ENST00000455727 IGKV6D-41A0A0C4DH26 115 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 TEX33O43247 280 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 NPR1P16066 1061 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 CDC25AP30304 524 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 ADKP55263 362 aaKnown RBP17.01■□□□□ 0.31
LDLR-202ENST00000455727 SOGA3Q5TF21 947 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 NAA15Q9BXJ9 866 aaKnown RBP17.01■□□□□ 0.31
LDLR-202ENST00000455727 KBTBD4Q9NVX7 518 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 SWAP70Q9UH65 585 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 SNHG28P0DPA3 235 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 PDHBP11177 359 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 ASPRV1Q53RT3 343 aa17.01■□□□□ 0.31
LDLR-202ENST00000455727 RIMBP2O15034 1052 aa17■□□□□ 0.31
LDLR-202ENST00000455727 OR52Z1P0C646 297 aa17■□□□□ 0.31
LDLR-202ENST00000455727 ALDH1B1P30837 517 aa17■□□□□ 0.31
LDLR-202ENST00000455727 NEK8Q86SG6 692 aa17■□□□□ 0.31
LDLR-202ENST00000455727 PPFIBP1Q86W92 1011 aa17■□□□□ 0.31
LDLR-202ENST00000455727 IGSF22Q8N9C0 903 aa17■□□□□ 0.31
LDLR-202ENST00000455727 PIGSQ96S52 555 aa17■□□□□ 0.31
LDLR-202ENST00000455727 CPVLQ9H3G5 476 aa17■□□□□ 0.31
LDLR-202ENST00000455727 CGNQ9P2M7 1197 aaKnown RBP17■□□□□ 0.31
LDLR-202ENST00000455727 EP400Q96L91 3159 aa17■□□□□ 0.31
LDLR-202ENST00000455727 USP17L5A8MUK1 530 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 H7C1D1 291 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 RASGRP2Q7LDG7 609 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 CERS5Q8N5B7 392 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 NELFBQ8WX92 580 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 HHIPL2Q6UWX4 724 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 ADSSL1Q8N142 457 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 ANKRD20A12PQ8NF67 263 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 CCDC51Q96ER9 411 aa16.99■□□□□ 0.31
LDLR-202ENST00000455727 CCNT1O60563 726 aaKnown RBP16.98■□□□□ 0.31
LDLR-202ENST00000455727 RHOBTB3O94955 611 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 PRCPP42785 496 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 KRT31Q15323 416 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 REXO1Q8N1G1 1221 aaKnown RBP16.98■□□□□ 0.31
LDLR-202ENST00000455727 RASSF8Q8NHQ8 419 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 SERPINB13Q9UIV8 391 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 TTF2Q9UNY4 1162 aaKnown RBP16.98■□□□□ 0.31
LDLR-202ENST00000455727 PP2D1A8MPX8 630 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 KLRC4O43908 158 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 RBL2Q08999 1139 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 LETM2Q2VYF4 491 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 TCP11X2Q5H9J9 407 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 PPP4R3BQ5MIZ7 849 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 GTPBP4Q9BZE4 634 aaKnown RBP16.98■□□□□ 0.31
LDLR-202ENST00000455727 VAT1LQ9HCJ6 419 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 DNAI1Q9UI46 699 aa16.98■□□□□ 0.31
LDLR-202ENST00000455727 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.98■□□□□ 0.311e-8■□□□□ 10.8
LDLR-202ENST00000455727 GREB1LQ9C091 1923 aaPredicted RBP16.98■□□□□ 0.31
LDLR-202ENST00000455727 TTLL1O95922 423 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 AKR1B1P15121 316 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 FECHP22830 423 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 PDE6BP35913 854 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 PICALMQ13492 652 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 NAA30Q147X3 362 aaPredicted RBP16.97■□□□□ 0.31
LDLR-202ENST00000455727 CABP7Q86V35 215 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 CNGA4Q8IV77 575 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 UBA5Q9GZZ9 404 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 DDX4Q9NQI0 724 aaKnown RBP16.97■□□□□ 0.31
LDLR-202ENST00000455727 KMT5BQ4FZB7 885 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 DPP8Q6V1X1 898 aaPredicted RBP16.97■□□□□ 0.31
LDLR-202ENST00000455727 GIMAP8Q8ND71 665 aaPredicted RBP16.97■□□□□ 0.31
LDLR-202ENST00000455727 TBCKQ8TEA7 893 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 SRRTQ9BXP5 876 aaKnown RBP16.97■□□□□ 0.31
LDLR-202ENST00000455727 USP40Q9NVE5 1235 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 GDAQ9Y2T3 454 aa16.97■□□□□ 0.31
LDLR-202ENST00000455727 N4BP3O15049 544 aa16.96■□□□□ 0.31
LDLR-202ENST00000455727 MFAP3LO75121 409 aa16.96■□□□□ 0.31
LDLR-202ENST00000455727 COPB1P53618 953 aaKnown RBP16.96■□□□□ 0.31
LDLR-202ENST00000455727 STIM1Q13586 685 aa16.96■□□□□ 0.31
LDLR-202ENST00000455727 TOGARAM2Q6ZUX3 1019 aa16.96■□□□□ 0.31
LDLR-202ENST00000455727 KCNJ18B7U540 433 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 TPM1P09493 284 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 TRIM14Q14142 442 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 KCNJ12Q14500 433 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 PPP1R18Q6NYC8 613 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 AKT1S1Q96B36 256 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 FEZ1Q99689 392 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 MRIQ9BWK5 157 aa16.96■□□□□ 0.3
LDLR-202ENST00000455727 TMX4Q9H1E5 349 aaPredicted RBP16.96■□□□□ 0.3
LDLR-202ENST00000455727 F8W031 263 aaPredicted RBP16.95■□□□□ 0.3
LDLR-202ENST00000455727 PLSCR1O15162 318 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 PLCG1P19174 1290 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 COL23A1Q86Y22 540 aaPredicted RBP16.95■□□□□ 0.3
LDLR-202ENST00000455727 FLAD1Q8NFF5 587 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 TEKT1Q969V4 418 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 MASTLQ96GX5 879 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 C7orf25Q9BPX7 421 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 EHD4Q9H223 541 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 MYH4Q9Y623 1939 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 COL11A2P13942 1736 aaPredicted RBP16.95■□□□□ 0.3
LDLR-202ENST00000455727 PSMA7O14818 248 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 GYPCP04921 128 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 CCDC175P0C221 793 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 SHMT1P34896 483 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 PPP1R2P41236 205 aa16.95■□□□□ 0.3
LDLR-202ENST00000455727 ADCY7P51828 1080 aa16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms