RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 CHMLP26374 656 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 CCDC178Q5BJE1 867 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 ANO1Q5XXA6 986 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 CCDC174Q6PII3 467 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 BTNL9Q6UXG8 535 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 ARRDC4Q8NCT1 418 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 RNF146Q9NTX7 359 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 MYH6P13533 1939 aa24.96■■□□□ 1.59
HMGB3-205ENST00000455596 PDHBP11177 359 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 ALAS1P13196 640 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 SNAP25P60880 206 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 TTBK2Q6IQ55 1244 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 ZNF467Q7Z7K2 595 aaPredicted RBP24.95■■□□□ 1.58
HMGB3-205ENST00000455596 DGKHQ86XP1 1220 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 C7orf61Q8IZ16 206 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 KRT23Q9C075 422 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 CNNM2Q9H8M5 875 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 GPCPD1Q9NPB8 672 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 CNPY2Q9Y2B0 182 aa24.95■■□□□ 1.58
HMGB3-205ENST00000455596 SYNGAP1Q96PV0 1343 aa24.94■■□□□ 1.58
HMGB3-205ENST00000455596 SLC16A2P36021 539 aa24.94■■□□□ 1.58
HMGB3-205ENST00000455596 SYDE2Q5VT97 1194 aa24.94■■□□□ 1.58
HMGB3-205ENST00000455596 MAMDC4Q6UXC1 1216 aa24.94■■□□□ 1.58
HMGB3-205ENST00000455596 CHRDL2Q6WN34 429 aa24.94■■□□□ 1.58
HMGB3-205ENST00000455596 TRERF1Q96PN7 1200 aa24.94■■□□□ 1.58
HMGB3-205ENST00000455596 RANBP17Q9H2T7 1088 aaKnown RBP24.94■■□□□ 1.58
HMGB3-205ENST00000455596 LCTP09848 1927 aa24.94■■□□□ 1.58
HMGB3-205ENST00000455596 ZNF543Q08ER8 600 aa24.93■■□□□ 1.58
HMGB3-205ENST00000455596 GJC2Q5T442 439 aaPredicted RBP24.93■■□□□ 1.58
HMGB3-205ENST00000455596 SENP6Q9GZR1 1112 aaPredicted RBP24.93■■□□□ 1.58
HMGB3-205ENST00000455596 ZSWIM5Q9P217 1185 aa24.93■■□□□ 1.58
HMGB3-205ENST00000455596 CCPG1Q9ULG6 757 aa24.93■■□□□ 1.58
HMGB3-205ENST00000455596 CEP290O15078 2479 aa24.92■■□□□ 1.58
HMGB3-205ENST00000455596 KBTBD13C9JR72 458 aa24.92■■□□□ 1.58
HMGB3-205ENST00000455596 SLC34A2O95436 690 aa24.92■■□□□ 1.58
HMGB3-205ENST00000455596 ICAM1P05362 532 aa24.92■■□□□ 1.58
HMGB3-205ENST00000455596 ZNF865P0CJ78 1059 aaPredicted RBP24.92■■□□□ 1.58
HMGB3-205ENST00000455596 SNHG28P0DPA3 235 aa24.92■■□□□ 1.58
HMGB3-205ENST00000455596 RARBP10826 455 aa24.92■■□□□ 1.58
HMGB3-205ENST00000455596 AKR1A1P14550 325 aa24.92■■□□□ 1.58
HMGB3-205ENST00000455596 TAL1P17542 331 aaPredicted RBP24.92■■□□□ 1.58
HMGB3-205ENST00000455596 ZSCAN10Q96SZ4 725 aaPredicted RBP24.92■■□□□ 1.58
HMGB3-205ENST00000455596 A1CFQ9NQ94 594 aaKnown RBP24.92■■□□□ 1.58
HMGB3-205ENST00000455596 SNAI1O95863 264 aaPredicted RBP24.91■■□□□ 1.58
HMGB3-205ENST00000455596 MYCNP04198 464 aaPredicted RBP24.91■■□□□ 1.58
HMGB3-205ENST00000455596 LRRC26Q2I0M4 334 aa24.91■■□□□ 1.58
HMGB3-205ENST00000455596 KAT14Q9H8E8 782 aa24.91■■□□□ 1.58
HMGB3-205ENST00000455596 POTEB2H3BUK9 544 aa24.9■■□□□ 1.58
HMGB3-205ENST00000455596 GPATCH4Q5T3I0 446 aaKnown RBP24.9■■□□□ 1.58
HMGB3-205ENST00000455596 PNMA1Q8ND90 353 aa24.9■■□□□ 1.58
HMGB3-205ENST00000455596 ANKS1AQ92625 1134 aa24.9■■□□□ 1.58
HMGB3-205ENST00000455596 FGD4Q96M96 766 aa24.9■■□□□ 1.58
HMGB3-205ENST00000455596 XPNPEP3Q9NQH7 507 aa24.9■■□□□ 1.58
HMGB3-205ENST00000455596 LRRC37A2A6NM11 1700 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 TNKSO95271 1327 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 SGSM2O43147 1006 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 CNTN2Q02246 1040 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 PTH1RQ03431 593 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 LRRC41Q15345 812 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 MUM1L1Q5H9M0 696 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 ENAHQ8N8S7 591 aaPredicted RBP24.89■■□□□ 1.58
HMGB3-205ENST00000455596 FAM133AQ8N9E0 248 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 UBAC1Q9BSL1 405 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 CDKN2AIPQ9NXV6 580 aaPredicted RBP24.89■■□□□ 1.58
HMGB3-205ENST00000455596 ZHX1Q9UKY1 873 aaPredicted RBP24.89■■□□□ 1.58
HMGB3-205ENST00000455596 FAM184BQ9ULE4 1060 aa24.89■■□□□ 1.58
HMGB3-205ENST00000455596 CENPQQ7L2Z9 268 aaPredicted RBP24.88■■□□□ 1.57
HMGB3-205ENST00000455596 ARMCX2Q7L311 632 aa24.88■■□□□ 1.57
HMGB3-205ENST00000455596 ABHD16BQ9H3Z7 469 aa24.88■■□□□ 1.57
HMGB3-205ENST00000455596 RBM27Q9P2N5 1060 aaKnown RBP24.88■■□□□ 1.57
HMGB3-205ENST00000455596 PNMA2Q9UL42 364 aa24.88■■□□□ 1.57
HMGB3-205ENST00000455596 ZMYND8Q9ULU4 1186 aaPredicted RBP24.88■■□□□ 1.57
HMGB3-205ENST00000455596 U3KPZ7 1027 aaPredicted RBP24.88■■□□□ 1.57
HMGB3-205ENST00000455596 TRDNQ13061 729 aa24.87■■□□□ 1.57
HMGB3-205ENST00000455596 ACVR2BQ13705 512 aa24.87■■□□□ 1.57
HMGB3-205ENST00000455596 CYP39A1Q9NYL5 469 aa24.87■■□□□ 1.57
HMGB3-205ENST00000455596 CYP21A2P08686 494 aa24.86■■□□□ 1.57
HMGB3-205ENST00000455596 GOLGA8HP0CJ92 632 aa24.86■■□□□ 1.57
HMGB3-205ENST00000455596 SYN1P17600 705 aa24.86■■□□□ 1.57
HMGB3-205ENST00000455596 ATN1P54259 1190 aaPredicted RBP24.86■■□□□ 1.57
HMGB3-205ENST00000455596 NSMFQ6X4W1 530 aa24.86■■□□□ 1.57
HMGB3-205ENST00000455596 RNF180Q86T96 592 aa24.86■■□□□ 1.57
HMGB3-205ENST00000455596 CCDC144CPQ8IYA2 1237 aa24.86■■□□□ 1.57
HMGB3-205ENST00000455596 PRO3102Q9H379 93 aa24.86■■□□□ 1.57
HMGB3-205ENST00000455596 SOWAHBA6NEL2 793 aa24.85■■□□□ 1.57
HMGB3-205ENST00000455596 ASB14A6NK59 587 aa24.85■■□□□ 1.57
HMGB3-205ENST00000455596 PGK1P00558 417 aa24.85■■□□□ 1.57
HMGB3-205ENST00000455596 ADCYAP1R1P41586 468 aa24.84■■□□□ 1.57
HMGB3-205ENST00000455596 ASPRV1Q53RT3 343 aa24.84■■□□□ 1.57
HMGB3-205ENST00000455596 IFIT1BQ5T764 474 aaKnown RBP24.84■■□□□ 1.57
HMGB3-205ENST00000455596 SLC39A5Q6ZMH5 540 aa24.84■■□□□ 1.57
HMGB3-205ENST00000455596 CYB5R4Q7L1T6 521 aa24.84■■□□□ 1.57
HMGB3-205ENST00000455596 LENG1Q96BZ8 264 aaPredicted RBP24.84■■□□□ 1.57
HMGB3-205ENST00000455596 WDR19Q8NEZ3 1342 aa24.84■■□□□ 1.57
HMGB3-205ENST00000455596 MAP4K1Q92918 833 aa24.83■■□□□ 1.57
HMGB3-205ENST00000455596 UBA5Q9GZZ9 404 aa24.83■■□□□ 1.57
HMGB3-205ENST00000455596 PHF24Q9UPV7 400 aa24.83■■□□□ 1.57
HMGB3-205ENST00000455596 NFIBO00712 420 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 ADAMTS4O75173 837 aa24.82■■□□□ 1.56
HMGB3-205ENST00000455596 DUSP11O75319 330 aaKnown RBP24.82■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms