RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 F5H6K3 240 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 DDAH1O94760 285 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 RCAN1P53805 252 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 KLRC3Q07444 240 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 PABPC4Q13310 644 aaKnown RBP eCLIP10.23□□□□□ -0.77
SYNE1-214ENST00000454018 MOGSQ13724 837 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 NFXL1Q6ZNB6 911 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 Q6ZUG5 572 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 CATIPQ7Z7H3 387 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 ANKRD23Q86SG2 305 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 DCAF4Q8WV16 495 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 BRI3BPQ8WY22 251 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 LRRC2Q9BYS8 371 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 PDRG1Q9NUG6 133 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 ZNFX1Q9P2E3 1918 aaKnown RBP10.23□□□□□ -0.77
SYNE1-214ENST00000454018 PLXNB2O15031 1838 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 NID2Q14112 1375 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 C3orf80F5H4A9 247 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 AOC2O75106 756 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 CALM1P0DP23 149 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 CALM2P0DP24 149 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 CALM3P0DP25 149 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 SNHG28P0DPA3 235 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 PDHBP11177 359 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 SLC1A4P43007 532 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 NEK4P51957 841 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 KIF23Q02241 960 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-214ENST00000454018 ANKRD1Q15327 319 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 SLFN13Q68D06 897 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 OTUD7BQ6GQQ9 843 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 APOA5Q6Q788 366 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 ZNF654Q8IZM8 581 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 SPICE1Q8N0Z3 855 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 BRF1Q92994 677 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 ALDH8A1Q9H2A2 487 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-214ENST00000454018 HMX1Q9NP08 348 aaPredicted RBP10.23□□□□□ -0.77
SYNE1-214ENST00000454018 PNMA3Q9UL41 463 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 SLC12A7Q9Y666 1083 aa10.23□□□□□ -0.77
SYNE1-214ENST00000454018 DOCK3Q8IZD9 2030 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 MYPNQ86TC9 1320 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 ST18O60284 1047 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 ALDH1A1P00352 501 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 BMP3P12645 472 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 HOXA7P31268 230 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-214ENST00000454018 TM4SF4P48230 202 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 VAC14Q08AM6 782 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 TROAPQ12815 778 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 DGKZQ13574 1117 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 TOB2Q14106 344 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-214ENST00000454018 CCDC96Q2M329 555 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 ASPRV1Q53RT3 343 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 KIAA1755Q5JYT7 1200 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 FAM83BQ5T0W9 1011 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 TREML2Q5T2D2 321 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 GPATCH4Q5T3I0 446 aaKnown RBP10.22□□□□□ -0.77
SYNE1-214ENST00000454018 SYNE3Q6ZMZ3 975 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 MAP3K14Q99558 947 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 TANGO6Q9C0B7 1094 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 RPAP3Q9H6T3 665 aaPredicted RBP10.22□□□□□ -0.77
SYNE1-214ENST00000454018 SENP2Q9HC62 589 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 CEP350Q5VT06 3117 aa10.22□□□□□ -0.77
SYNE1-214ENST00000454018 PLXNA1Q9UIW2 1896 aa10.21□□□□□ -0.77
SYNE1-214ENST00000454018 KLF18A0A0U1RQI7 1052 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 GOLGA8BA8MQT2 603 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L15C9J2P7 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 BTBD19C9JJ37 291 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L13C9JLJ4 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L11C9JVI0 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L18D6R9N7 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L22D6RA61 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L17D6RBQ6 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L19D6RCP7 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L20D6RJB6 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 IGF2BP3O00425 579 aaKnown RBP eCLIP10.21□□□□□ -0.78
SYNE1-214ENST00000454018 ZBTB43O43298 467 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 PARP1P09874 1014 aaKnown RBP10.21□□□□□ -0.78
SYNE1-214ENST00000454018 KIF5BP33176 963 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 STAT2P52630 851 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 EVCP57679 992 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 IRX3P78415 501 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-214ENST00000454018 ZNF543Q08ER8 600 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 USP17L24Q0WX57 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 GRM4Q14833 912 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 PRPF38BQ5VTL8 546 aaKnown RBP10.21□□□□□ -0.78
SYNE1-214ENST00000454018 GPAT2Q6NUI2 795 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 MICU3Q86XE3 530 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 FAM43AQ8N2R8 423 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 CTCFLQ8NI51 663 aaPredicted RBP10.21□□□□□ -0.78
SYNE1-214ENST00000454018 ZIC5Q96T25 663 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 PARK7Q99497 189 aaKnown RBP10.21□□□□□ -0.78
SYNE1-214ENST00000454018 ISY1Q9ULR0 285 aaKnown RBP10.21□□□□□ -0.78
SYNE1-214ENST00000454018 IVNS1ABPQ9Y6Y0 642 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 CASP8AP2Q9UKL3 1982 aa10.21□□□□□ -0.78
SYNE1-214ENST00000454018 PALM3A6NDB9 673 aaPredicted RBP10.2□□□□□ -0.78
SYNE1-214ENST00000454018 PDHXO00330 501 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 PLA2G6O60733 806 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 FLOT1O75955 427 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 AK2P54819 239 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 APOBRQ0VD83 1088 aa10.2□□□□□ -0.78
SYNE1-214ENST00000454018 PPP2R5BQ15173 497 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms