RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 USH1GQ495M9 461 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 MCTP1Q6DN14 999 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 FERMT3Q86UX7 667 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 COA7Q96BR5 231 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 ATG4CQ96DT6 458 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 RANBP17Q9H2T7 1088 aaKnown RBP16.87■□□□□ 0.29
TNF-208ENST00000449264 BARHL2Q9NY43 387 aa16.87■□□□□ 0.29
TNF-208ENST00000449264 CTDP1Q9Y5B0 961 aaPredicted RBP16.87■□□□□ 0.29
TNF-208ENST00000449264 GRM1Q13255 1194 aa16.86■□□□□ 0.29
TNF-208ENST00000449264 TYW1BQ6NUM6 668 aa16.86■□□□□ 0.29
TNF-208ENST00000449264 MS4A4AQ96JQ5 239 aa16.86■□□□□ 0.29
TNF-208ENST00000449264 ZDHHC9Q9Y397 364 aa16.86■□□□□ 0.29
TNF-208ENST00000449264 BRD1O95696 1058 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 SLC10A3P09131 477 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 ZSCAN22P10073 491 aaPredicted RBP16.85■□□□□ 0.29
TNF-208ENST00000449264 DSG3P32926 999 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 COG2Q14746 738 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 FBXO11Q86XK2 927 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 CCDC148Q8NFR7 591 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 BRI3BPQ8WY22 251 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 A0A0G2JMZ2 1700 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 SPDYE16A6NNV3 312 aaPredicted RBP16.85■□□□□ 0.29
TNF-208ENST00000449264 hCG_1984214I3L0E3 225 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 MMP1P03956 469 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 NLRP5P59047 1200 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 PABPC4Q13310 644 aaKnown RBP eCLIP16.85■□□□□ 0.29
TNF-208ENST00000449264 GPAT2Q6NUI2 795 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 CPXCR1Q8N123 301 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 ZNF713Q8N859 430 aaPredicted RBP16.85■□□□□ 0.29
TNF-208ENST00000449264 CCDC12Q8WUD4 166 aaPredicted RBP16.85■□□□□ 0.29
TNF-208ENST00000449264 AMNQ9BXJ7 453 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 SLC38A10Q9HBR0 1119 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 PCDHA1Q9Y5I3 950 aa16.85■□□□□ 0.29
TNF-208ENST00000449264 VWA5AO00534 786 aa16.84■□□□□ 0.29
TNF-208ENST00000449264 ZBED4O75132 1171 aa16.84■□□□□ 0.29
TNF-208ENST00000449264 PDIA4P13667 645 aaKnown RBP16.84■□□□□ 0.29
TNF-208ENST00000449264 HOXA7P31268 230 aaPredicted RBP16.84■□□□□ 0.29
TNF-208ENST00000449264 GNL2Q13823 731 aaKnown RBP16.84■□□□□ 0.29
TNF-208ENST00000449264 SAFBQ15424 915 aaKnown RBP eCLIP16.84■□□□□ 0.29
TNF-208ENST00000449264 PHF20Q9BVI0 1012 aa16.84■□□□□ 0.29
TNF-208ENST00000449264 ASCC2Q9H1I8 757 aaPredicted RBP16.84■□□□□ 0.29
TNF-208ENST00000449264 SH3GLB2Q9NR46 395 aa16.84■□□□□ 0.29
TNF-208ENST00000449264 MYH15Q9Y2K3 1946 aa16.83■□□□□ 0.29
TNF-208ENST00000449264 BTBD19C9JJ37 291 aa16.83■□□□□ 0.28
TNF-208ENST00000449264 F13A1P00488 732 aa16.83■□□□□ 0.28
TNF-208ENST00000449264 APLP1P51693 650 aa16.83■□□□□ 0.28
TNF-208ENST00000449264 FOXD4L6Q3SYB3 417 aaPredicted RBP16.83■□□□□ 0.28
TNF-208ENST00000449264 FOXD4L3Q6VB84 417 aaPredicted RBP16.83■□□□□ 0.28
TNF-208ENST00000449264 DIS3L2Q8IYB7 885 aaKnown RBP16.83■□□□□ 0.28
TNF-208ENST00000449264 RAVER2Q9HCJ3 691 aaKnown RBP16.83■□□□□ 0.28
TNF-208ENST00000449264 HOXC10Q9NYD6 342 aa16.83■□□□□ 0.28
TNF-208ENST00000449264 CCPG1Q9ULG6 757 aa16.83■□□□□ 0.28
TNF-208ENST00000449264 MYPNQ86TC9 1320 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 PDHXO00330 501 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 OSBPP22059 807 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 KRT2P35908 639 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 CYP4F22Q6NT55 531 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 PPP1R18Q6NYC8 613 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 CCDC102AQ96A19 550 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 AGBL1Q96MI9 1066 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 P2RX7Q99572 595 aaKnown RBP16.82■□□□□ 0.28
TNF-208ENST00000449264 BRMS1Q9HCU9 246 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 CREBZFQ9NS37 354 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 RBBP6Q7Z6E9 1792 aaKnown RBP16.82■□□□□ 0.28
TNF-208ENST00000449264 ZNF536O15090 1300 aa16.82■□□□□ 0.28
TNF-208ENST00000449264 SMCO2A6NFE2 343 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 FAM155AB1AL88 458 aaPredicted RBP16.81■□□□□ 0.28
TNF-208ENST00000449264 KIF28PB7ZC32 967 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 ICAM1P05362 532 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 FDX1P10109 184 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 CALML3P27482 149 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 HERVK_113P62684 666 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 KIF23Q02241 960 aaPredicted RBP16.81■□□□□ 0.28
TNF-208ENST00000449264 PLS1Q14651 629 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 FAM43AQ8N2R8 423 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 OXER1Q8TDS5 423 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 HHIPL1Q96JK4 782 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 PNMA3Q9UL41 463 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 MANSC4A6NHS7 340 aaPredicted RBP16.81■□□□□ 0.28
TNF-208ENST00000449264 BTBD18B2RXH4 712 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 CYP2C8P10632 490 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 ADCY7P51828 1080 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 RESTQ13127 1097 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 NR5A1Q13285 461 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 ANKRD23Q86SG2 305 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 REPS2Q8NFH8 660 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 PAGR1Q9BTK6 254 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 ZMYND12Q9H0C1 365 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 C6orf50Q9HD87 102 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 HOMER2Q9NSB8 354 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 PCDHA4Q9UN74 947 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 ADAMTS5Q9UNA0 930 aa16.81■□□□□ 0.28
TNF-208ENST00000449264 ADAMTS3O15072 1205 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 PEX10O60683 326 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 ALAS1P13196 640 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 GNA11P29992 359 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 TRAF1Q13077 416 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 TMEM132BQ14DG7 1078 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 NPY5RQ15761 445 aa16.8■□□□□ 0.28
TNF-208ENST00000449264 SNRNP48Q6IEG0 339 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms