RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-208ENST00000443046 PPP1R12CQ9BZL4 782 aa17.29■□□□□ 0.36
HMGN1-208ENST00000443046 SPC25Q9HBM1 224 aa17.29■□□□□ 0.36
HMGN1-208ENST00000443046 SLC38A10Q9HBR0 1119 aa17.29■□□□□ 0.36
HMGN1-208ENST00000443046 SLC4A4Q9Y6R1 1079 aa17.29■□□□□ 0.36
HMGN1-208ENST00000443046 IGKV6D-41A0A0C4DH26 115 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 TLR3O15455 904 aaKnown RBP17.28■□□□□ 0.36
HMGN1-208ENST00000443046 RAD21O60216 631 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 NDUFB10O96000 172 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 CYP2C18P33260 490 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 SBK1Q52WX2 424 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 ARMCX2Q7L311 632 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 SIRT2Q8IXJ6 389 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 UHRF1Q96T88 793 aaPredicted RBP17.28■□□□□ 0.36
HMGN1-208ENST00000443046 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.28■□□□□ 0.36
HMGN1-208ENST00000443046 PUS7LQ9H0K6 701 aaKnown RBP17.28■□□□□ 0.36
HMGN1-208ENST00000443046 BOLA2Q9H3K6 86 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 MSRAQ9UJ68 235 aa17.28■□□□□ 0.36
HMGN1-208ENST00000443046 YBX2Q9Y2T7 364 aaKnown RBP17.28■□□□□ 0.36
HMGN1-208ENST00000443046 ASTN1O14525 1302 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 FGBP02675 491 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 OAZ1P54368 228 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 CCDC85BQ15834 202 aaPredicted RBP17.27■□□□□ 0.36
HMGN1-208ENST00000443046 CHST13Q8NET6 341 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 MKL1Q969V6 931 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 VTI1AQ96AJ9 217 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 DDRGK1Q96HY6 314 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 NKX2-4Q9H2Z4 354 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 ARPP21Q9UBL0 812 aaPredicted RBP17.27■□□□□ 0.36
HMGN1-208ENST00000443046 FBXO40Q9UH90 709 aa17.27■□□□□ 0.36
HMGN1-208ENST00000443046 MYH4Q9Y623 1939 aa17.27■□□□□ 0.35
HMGN1-208ENST00000443046 GRIN2DO15399 1336 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 ZBED4O75132 1171 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 RPAP2Q8IXW5 612 aaPredicted RBP17.26■□□□□ 0.35
HMGN1-208ENST00000443046 CCDC144CPQ8IYA2 1237 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 CPXCR1Q8N123 301 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 ANKRD35Q8N283 1001 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 PANK1Q8TE04 598 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 VWCEQ96DN2 955 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 SLC28A3Q9HAS3 691 aa17.26■□□□□ 0.35
HMGN1-208ENST00000443046 RAVER2Q9HCJ3 691 aaKnown RBP17.26■□□□□ 0.35
HMGN1-208ENST00000443046 GNEQ9Y223 722 aaKnown RBP17.26■□□□□ 0.35
HMGN1-208ENST00000443046 UMODL1Q5DID0 1318 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 APBB1O00213 710 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 RAB11FIP3O75154 756 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 CABYRO75952 493 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 BMP1P13497 986 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 PLA2G5P39877 138 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 FAM133AQ8N9E0 248 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 STRBPQ96SI9 672 aaKnown RBP17.25■□□□□ 0.35
HMGN1-208ENST00000443046 SEZ6LQ9BYH1 1024 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 FEM1BQ9UK73 627 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 SYNPO2Q9UMS6 1093 aa17.25■□□□□ 0.35
HMGN1-208ENST00000443046 TCF20Q9UGU0 1960 aaKnown RBP17.24■□□□□ 0.35
HMGN1-208ENST00000443046 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.24■□□□□ 0.35
HMGN1-208ENST00000443046 GSG1L2A8MUP6 293 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 IGFBP4P22692 258 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 BEX3Q00994 111 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 CNTN2Q02246 1040 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 GIMAP6Q6P9H5 292 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 KIFC2Q96AC6 838 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 NOC4LQ9BVI4 516 aaKnown RBP17.24■□□□□ 0.35
HMGN1-208ENST00000443046 MTIF3Q9H2K0 278 aaKnown RBP17.24■□□□□ 0.35
HMGN1-208ENST00000443046 HIPK3Q9H422 1215 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 CLIP2Q9UDT6 1046 aa17.24■□□□□ 0.35
HMGN1-208ENST00000443046 TNFAIP2Q03169 654 aa17.23■□□□□ 0.35
HMGN1-208ENST00000443046 ITGA7Q13683 1181 aa17.23■□□□□ 0.35
HMGN1-208ENST00000443046 ZSCAN25Q6NSZ9 544 aa17.23■□□□□ 0.35
HMGN1-208ENST00000443046 CXCL17Q6UXB2 119 aa17.23■□□□□ 0.35
HMGN1-208ENST00000443046 OTOP2Q7RTS6 562 aa17.23■□□□□ 0.35
HMGN1-208ENST00000443046 GMCL1P1Q8NEA9 526 aa17.23■□□□□ 0.35
HMGN1-208ENST00000443046 WNT8AQ9H1J5 351 aa17.23■□□□□ 0.35
HMGN1-208ENST00000443046 LRRC37A2A6NM11 1700 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 SOWAHBA6NEL2 793 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 HMMRO75330 724 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 FDX1P10109 184 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 POU3F3P20264 500 aaPredicted RBP17.22■□□□□ 0.35
HMGN1-208ENST00000443046 SLC4A3P48751 1232 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 MKNK2Q9HBH9 465 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 ZBTB40Q9NUA8 1239 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 MTMR4Q9NYA4 1195 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 PCDHA11Q9Y5I1 949 aa17.22■□□□□ 0.35
HMGN1-208ENST00000443046 PRRC2BQ5JSZ5 2229 aaKnown RBP17.22■□□□□ 0.35
HMGN1-208ENST00000443046 RABGGTBP53611 331 aa17.21■□□□□ 0.35
HMGN1-208ENST00000443046 CCL23P55773 120 aa17.21■□□□□ 0.35
HMGN1-208ENST00000443046 FSCN1Q16658 493 aaKnown RBP17.21■□□□□ 0.35
HMGN1-208ENST00000443046 TLK2Q86UE8 772 aa17.21■□□□□ 0.35
HMGN1-208ENST00000443046 CEP95Q96GE4 821 aa17.21■□□□□ 0.35
HMGN1-208ENST00000443046 AGBL1Q96MI9 1066 aa17.21■□□□□ 0.35
HMGN1-208ENST00000443046 TRPV6Q9H1D0 765 aa17.21■□□□□ 0.35
HMGN1-208ENST00000443046 A1CFQ9NQ94 594 aaKnown RBP17.21■□□□□ 0.35
HMGN1-208ENST00000443046 CTDP1Q9Y5B0 961 aaPredicted RBP17.21■□□□□ 0.35
HMGN1-208ENST00000443046 ZNF536O15090 1300 aa17.21■□□□□ 0.34
HMGN1-208ENST00000443046 ASB14A6NK59 587 aa17.2■□□□□ 0.34
HMGN1-208ENST00000443046 B4GALT4O60513 344 aa17.2■□□□□ 0.34
HMGN1-208ENST00000443046 MYOGP15173 224 aa17.2■□□□□ 0.34
HMGN1-208ENST00000443046 SMPD1P17405 629 aa17.2■□□□□ 0.34
HMGN1-208ENST00000443046 TAPT1Q6NXT6 567 aa17.2■□□□□ 0.34
HMGN1-208ENST00000443046 RPUSD2Q8IZ73 545 aaKnown RBP17.2■□□□□ 0.34
HMGN1-208ENST00000443046 FAM122AQ96E09 287 aa17.2■□□□□ 0.34
HMGN1-208ENST00000443046 NECAB3Q96P71 396 aaPredicted RBP17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms