RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 KCTD1Q719H9 257 aa18.9■□□□□ 0.62
PTPRF-209ENST00000438120 UHMK1Q8TAS1 419 aaKnown RBP18.9■□□□□ 0.62
PTPRF-209ENST00000438120 NUCKS1Q9H1E3 243 aaKnown RBP18.9■□□□□ 0.62
PTPRF-209ENST00000438120 DBNLQ9UJU6 430 aaKnown RBP18.9■□□□□ 0.62
PTPRF-209ENST00000438120 I3L4J1 428 aa18.89■□□□□ 0.62
PTPRF-209ENST00000438120 CAPN9O14815 690 aa18.89■□□□□ 0.62
PTPRF-209ENST00000438120 ARMCX5Q6P1M9 558 aa18.89■□□□□ 0.62
PTPRF-209ENST00000438120 DPH5Q9H2P9 285 aa18.89■□□□□ 0.62
PTPRF-209ENST00000438120 ZBTB1Q9Y2K1 713 aa18.89■□□□□ 0.62
PTPRF-209ENST00000438120 APOL6Q9BWW8 343 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 RAB20Q9NX57 234 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 TACC3Q9Y6A5 838 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 KRIT1O00522 736 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 GABPB2Q8TAK5 448 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-209ENST00000438120 ANTXR1Q9H6X2 564 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 C1orf112Q9NSG2 853 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 STAM2O75886 525 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 SLC12A2P55011 1212 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 LGSNQ5TDP6 509 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 GBP6Q6ZN66 633 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 PNMA8AQ86V59 439 aaPredicted RBP18.89■□□□□ 0.61
PTPRF-209ENST00000438120 PALM2Q8IXS6 379 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 SPC25Q9HBM1 224 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 KIAA1024Q9UPX6 916 aa18.89■□□□□ 0.61
PTPRF-209ENST00000438120 TNNC2P02585 160 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 POLGP54098 1239 aaPredicted RBP18.88■□□□□ 0.61
PTPRF-209ENST00000438120 ANKRD13CQ8N6S4 541 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 CACNB1Q02641 598 aaPredicted RBP18.88■□□□□ 0.61
PTPRF-209ENST00000438120 CCDC62Q6P9F0 684 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 GSDMBQ8TAX9 411 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 CABS1Q96KC9 395 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 CFAP43Q8NDM7 1665 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 CMA1P23946 247 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 SLC16A2P36021 539 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 BIRC2Q13490 618 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 ERCC6LQ2NKX8 1250 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 IWS1Q96ST2 819 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 DBNDD1Q9H9R9 158 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 KIF24Q5T7B8 1368 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 ADCY8P40145 1251 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 YWHAEP62258 255 aaKnown RBP18.88■□□□□ 0.61
PTPRF-209ENST00000438120 ITKQ08881 620 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 KAZNQ674X7 775 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 HACE1Q8IYU2 909 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 MYRIPQ8NFW9 859 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 RSRC1Q96IZ7 334 aaKnown RBP18.88■□□□□ 0.61
PTPRF-209ENST00000438120 RILPQ96NA2 401 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 PPP1R12CQ9BZL4 782 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 DDAH1O94760 285 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 INPP5BP32019 993 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 PCK1P35558 622 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 PI16Q6UXB8 463 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 RASEFQ8IZ41 740 aa18.88■□□□□ 0.61
PTPRF-209ENST00000438120 DCPSQ96C86 337 aaKnown RBP18.88■□□□□ 0.61
PTPRF-209ENST00000438120 PPEF1O14829 653 aaPredicted RBP18.87■□□□□ 0.61
PTPRF-209ENST00000438120 GDF11O95390 407 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 CTNNA1P35221 906 aaKnown RBP18.87■□□□□ 0.61
PTPRF-209ENST00000438120 TRIM50Q86XT4 487 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 BLMP54132 1417 aaPredicted RBP18.87■□□□□ 0.61
PTPRF-209ENST00000438120 TRIM37O94972 964 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 KRT12Q99456 494 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 PDE6CP51160 858 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 DCAF15Q66K64 600 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 ZNF589Q86UQ0 364 aaPredicted RBP18.87■□□□□ 0.61
PTPRF-209ENST00000438120 DMP1Q13316 513 aaPredicted RBP18.87■□□□□ 0.61
PTPRF-209ENST00000438120 NAA35Q5VZE5 725 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 LPXNO60711 386 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 GOLGA8FQ08AF8 430 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 GOLGA8DPQ0D2H9 430 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 ERFEQ4G0M1 354 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 DPY19L2Q6NUT2 758 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 AFAP1L2Q8N4X5 818 aa18.87■□□□□ 0.61
PTPRF-209ENST00000438120 LSG1Q9H089 658 aaKnown RBP18.87■□□□□ 0.61
PTPRF-209ENST00000438120 SULF1Q8IWU6 871 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 PRKAB2O43741 272 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 GTPBP6O43824 516 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-209ENST00000438120 CSRNP1Q96S65 589 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 RAB17Q9H0T7 212 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 PPP2R2CQ9Y2T4 447 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 MCF2L2Q86YR7 1114 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 GPT2Q8TD30 523 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 TMEM191BP0C7N4 346 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 RFX1P22670 979 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 PABPC4Q13310 644 aaKnown RBP eCLIP18.86■□□□□ 0.61
PTPRF-209ENST00000438120 KMT5BQ4FZB7 885 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 FAM26FQ5R3K3 315 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 TRIM58Q8NG06 486 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 RASSF4Q9H2L5 321 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 MTMR3Q13615 1198 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 SMYD4Q8IYR2 804 aaPredicted RBP18.86■□□□□ 0.61
PTPRF-209ENST00000438120 ADPGKQ9BRR6 497 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 SLC5A4Q9NY91 659 aa18.86■□□□□ 0.61
PTPRF-209ENST00000438120 A0A087WWV3 80 aa18.85■□□□□ 0.61
PTPRF-209ENST00000438120 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.85■□□□□ 0.61
PTPRF-209ENST00000438120 POMGNT1Q8WZA1 660 aa18.85■□□□□ 0.61
PTPRF-209ENST00000438120 SPDYE16A6NNV3 312 aaPredicted RBP18.85■□□□□ 0.61
PTPRF-209ENST00000438120 SPDYE2Q495Y8 402 aa18.85■□□□□ 0.61
PTPRF-209ENST00000438120 RABGAP1Q9Y3P9 1069 aa18.85■□□□□ 0.61
PTPRF-209ENST00000438120 COL4A3BPQ9Y5P4 624 aa18.85■□□□□ 0.61
PTPRF-209ENST00000438120 RGS16O15492 202 aaPredicted RBP18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms