RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 HOXC9P31274 260 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 NT5DC1Q5TFE4 455 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 PAF1Q8N7H5 531 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 CCDC42Q96M95 316 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 NUP58Q9BVL2 599 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 ETAA1Q9NY74 926 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 G3BP2Q9UN86 482 aaKnown RBP8.28□□□□□ -1.08
CPSF6-202ENST00000435070 NCAPD2Q15021 1401 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 B4DLN1 442 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 EPS15P42566 896 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 ZNF174Q15697 407 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 GRIPAP1Q4V328 841 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 TMEM67Q5HYA8 995 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 CYB5RLQ6IPT4 315 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 TYW1BQ6NUM6 668 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 CCDC26Q8TAB7 109 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 SPAG5Q96R06 1193 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 OSBPL9Q96SU4 736 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 A6NNZ2 444 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 ATP6V1G2O95670 118 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 CEBPAP49715 358 aaPredicted RBP8.28□□□□□ -1.08
CPSF6-202ENST00000435070 TUBB8Q3ZCM7 444 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 IQCKQ8N0W5 287 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 KCNV2Q8TDN2 545 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 LRRC59Q96AG4 307 aaKnown RBP8.28□□□□□ -1.08
CPSF6-202ENST00000435070 KRT12Q99456 494 aa8.28□□□□□ -1.08
CPSF6-202ENST00000435070 PARP1P09874 1014 aaKnown RBP8.27□□□□□ -1.08
CPSF6-202ENST00000435070 EPB41P11171 864 aaKnown RBP8.27□□□□□ -1.08
CPSF6-202ENST00000435070 SSR1P43307 286 aaKnown RBP8.27□□□□□ -1.08
CPSF6-202ENST00000435070 ADCY2Q08462 1091 aa8.27□□□□□ -1.08
CPSF6-202ENST00000435070 PAK1Q13153 545 aa8.27□□□□□ -1.08
CPSF6-202ENST00000435070 C6orf89Q6UWU4 347 aa8.27□□□□□ -1.08
CPSF6-202ENST00000435070 BZW1Q7L1Q6 419 aaKnown RBP8.27□□□□□ -1.08
CPSF6-202ENST00000435070 MMGT1Q8N4V1 131 aa8.27□□□□□ -1.08
CPSF6-202ENST00000435070 PLIN2Q99541 437 aa8.27□□□□□ -1.08
CPSF6-202ENST00000435070 SLC39A2Q9NP94 309 aa8.27□□□□□ -1.08
CPSF6-202ENST00000435070 ENOX2Q16206 610 aaKnown RBP8.27□□□□□ -1.09
CPSF6-202ENST00000435070 CCDC63Q8NA47 563 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 MDM1Q8TC05 714 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 TRPC6Q9Y210 931 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 LGR5O75473 907 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 ELF3P78545 371 aaPredicted RBP8.27□□□□□ -1.09
CPSF6-202ENST00000435070 LRRC24Q50LG9 513 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 TRIM68Q6AZZ1 485 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 TMC4Q7Z404 712 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 IFT20Q8IY31 132 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 CUL5Q93034 780 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.27□□□□□ -1.09
CPSF6-202ENST00000435070 NOVA2Q9UNW9 492 aaKnown RBP8.27□□□□□ -1.09
CPSF6-202ENST00000435070 PIK3C2BO00750 1634 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 CRYBG1Q9Y4K1 1723 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 IFIT3O14879 490 aaKnown RBP8.27□□□□□ -1.09
CPSF6-202ENST00000435070 AKR1B10O60218 316 aa8.27□□□□□ -1.09
CPSF6-202ENST00000435070 DDX42Q86XP3 938 aaKnown RBP eCLIP8.27□□□□□ -1.09
CPSF6-202ENST00000435070 PLCB4Q15147 1175 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 IFIH1Q9BYX4 1025 aaKnown RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 PACSIN2Q9UNF0 486 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 SLC12A7Q9Y666 1083 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 FOXP2O15409 715 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 GPAA1O43292 621 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 SNUPNO95149 360 aaKnown RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 GKAP1Q5VSY0 366 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 MB21D1Q8N884 522 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 TATDN2Q93075 761 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 TRIM47Q96LD4 638 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 LIMA1Q9UHB6 759 aaKnown RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 STK38LQ9Y2H1 464 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 SRPRBQ9Y5M8 271 aaKnown RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 ITIH6Q6UXX5 1313 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 KIDINS220Q9ULH0 1771 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 USO1O60763 962 aaKnown RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 RFX5P48382 616 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 SPAG1Q07617 926 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 ITGB3BPQ13352 177 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 TBC1D10CQ8IV04 446 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 PRCCQ92733 491 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 PANK4Q9NVE7 773 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 NRKQ7Z2Y5 1582 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 SMIM23A6NLE4 172 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 GCOM1H8Y6P7 765 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 MYZAPP0CAP1 466 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 RWDD2BP57060 319 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 PAK2Q13177 524 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 RILPL1Q5EBL4 403 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 UBLCP1Q8WVY7 318 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 NUTM2BA6NNL0 878 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 DCDC2CA8MYV0 355 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 NUTM2EB1AL46 878 aaPredicted RBP8.26□□□□□ -1.09
CPSF6-202ENST00000435070 FECHP22830 423 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 TRIM14Q14142 442 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 C2CD5Q86YS7 1000 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 ABTB2Q8N961 1025 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 RAPGEF5Q92565 580 aa8.26□□□□□ -1.09
CPSF6-202ENST00000435070 ZNF263O14978 683 aa8.25□□□□□ -1.09
CPSF6-202ENST00000435070 RCSD1Q6JBY9 416 aa8.25□□□□□ -1.09
CPSF6-202ENST00000435070 ARFGAP2Q8N6H7 521 aa8.25□□□□□ -1.09
CPSF6-202ENST00000435070 AGAP11Q8TF27 550 aa8.25□□□□□ -1.09
CPSF6-202ENST00000435070 PUS3Q9BZE2 481 aaKnown RBP8.25□□□□□ -1.09
CPSF6-202ENST00000435070 MAGEC2Q9UBF1 373 aaPredicted RBP8.25□□□□□ -1.09
CPSF6-202ENST00000435070 ATXN2Q99700 1313 aaKnown RBP8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms