RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 HOXA13P31271 388 aaPredicted RBP9.46□□□□□ -0.89
CD44-208ENST00000428726 GNG11P61952 73 aa9.46□□□□□ -0.89
CD44-208ENST00000428726 APBA1Q02410 837 aa9.46□□□□□ -0.89
CD44-208ENST00000428726 RBL2Q08999 1139 aa9.46□□□□□ -0.89
CD44-208ENST00000428726 PFKFB3Q16875 520 aaPredicted RBP9.46□□□□□ -0.89
CD44-208ENST00000428726 CCDC155Q8N6L0 562 aa9.46□□□□□ -0.89
CD44-208ENST00000428726 ACRBPQ8NEB7 543 aa9.46□□□□□ -0.89
CD44-208ENST00000428726 SHTN1A0MZ66 631 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 DDTLA6NHG4 134 aaPredicted RBP9.46□□□□□ -0.9
CD44-208ENST00000428726 MEIS1O00470 390 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 N4BP3O15049 544 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 ECM2O94769 699 aaPredicted RBP9.46□□□□□ -0.9
CD44-208ENST00000428726 CASP14P31944 242 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 STAT3P40763 770 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 RHBDL3P58872 404 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 SCN7AQ01118 1682 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 PRAMEF18Q5VWM3 479 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 SMAP1Q8IYB5 467 aaPredicted RBP9.46□□□□□ -0.9
CD44-208ENST00000428726 NOC3LQ8WTT2 800 aaKnown RBP9.46□□□□□ -0.9
CD44-208ENST00000428726 WDR24Q96S15 920 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 PSMB7Q99436 277 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 PUF60Q9UHX1 559 aaKnown RBP9.46□□□□□ -0.9
CD44-208ENST00000428726 TUBE1Q9UJT0 475 aa9.46□□□□□ -0.9
CD44-208ENST00000428726 PDS5AQ29RF7 1337 aaKnown RBP9.45□□□□□ -0.9
CD44-208ENST00000428726 NPHP3-ACAD11A0A0J9YXS1 232 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 PRCPP42785 496 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 SPTY2D1Q68D10 685 aaPredicted RBP9.45□□□□□ -0.9
CD44-208ENST00000428726 FCHSD1Q86WN1 690 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 VEZTQ9HBM0 779 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 CACNA1SQ13698 1873 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 CASZ1Q86V15 1759 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 SLC37A4O43826 429 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 KIF5BP33176 963 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 DMTNQ08495 405 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 SOGA3Q5TF21 947 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 DTHD1Q6ZMT9 781 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 MTERF4Q7Z6M4 381 aaKnown RBP9.45□□□□□ -0.9
CD44-208ENST00000428726 IGSF22Q8N9C0 903 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 DRC1Q96MC2 740 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 IKZF4Q9H2S9 585 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 SYNRGQ9UMZ2 1314 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 PLCG1P19174 1290 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 FXR1P51114 621 aaKnown RBP eCLIP9.45□□□□□ -0.9
CD44-208ENST00000428726 ASIC1P78348 528 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 JAG1P78504 1218 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 SEPT2Q15019 361 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 TMED8Q6PL24 325 aaPredicted RBP9.45□□□□□ -0.9
CD44-208ENST00000428726 NELFBQ8WX92 580 aa9.45□□□□□ -0.9
CD44-208ENST00000428726 SEC63Q9UGP8 760 aaKnown RBP9.45□□□□□ -0.9
CD44-208ENST00000428726 MCM6Q14566 821 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 EZH2Q15910 746 aaKnown RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 KMT5BQ4FZB7 885 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 CDC42EP5Q6NZY7 148 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 MAEAQ7L5Y9 396 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 C2CD5Q86YS7 1000 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 NELFCDQ8IXH7 590 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 CARD6Q9BX69 1037 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 SRRTQ9BXP5 876 aaKnown RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 MKRN1Q9UHC7 482 aaKnown RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 LEMD3Q9Y2U8 911 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 SFI1A8K8P3 1242 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 ENC1O14682 589 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 POLR3GO15318 223 aaPredicted RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 SEC31AO94979 1220 aaKnown RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 FGRP09769 529 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 SLFN14P0C7P3 912 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 CALM1P0DP23 149 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 CALM2P0DP24 149 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 CALM3P0DP25 149 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 GTF2F1P35269 517 aaKnown RBP eCLIP9.44□□□□□ -0.9
CD44-208ENST00000428726 CYP4A11Q02928 519 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 ARID5AQ03989 594 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 ELOA2Q8IYF1 753 aaPredicted RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 TBC1D5Q92609 795 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 GDAP1L1Q96MZ0 367 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 CHP1Q99653 195 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 BAG1Q99933 345 aaPredicted RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 SLF1Q9BQI6 1058 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 MRPL44Q9H9J2 332 aaKnown RBP9.44□□□□□ -0.9
CD44-208ENST00000428726 CEP131Q9UPN4 1083 aa9.44□□□□□ -0.9
CD44-208ENST00000428726 STXBP3O00186 592 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 IKBKBO14920 756 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 CHMP2AO43633 222 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 GSDMDP57764 484 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 PRKG1Q13976 671 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 MORC3Q14149 939 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 FBXO38Q6PIJ6 1188 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 KCNK18Q7Z418 384 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 CYP2W1Q8TAV3 490 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 CRACR2AQ9BSW2 395 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 RBM28Q9NW13 759 aaKnown RBP9.43□□□□□ -0.9
CD44-208ENST00000428726 IMPACTQ9P2X3 320 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 HOOK1Q9UJC3 728 aaKnown RBP9.43□□□□□ -0.9
CD44-208ENST00000428726 PCDHA4Q9UN74 947 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 DUOX1Q9NRD9 1551 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 PPP1R3GB7ZBB8 358 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 UBXN1Q04323 297 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 STK4Q13043 487 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 SKIDA1Q1XH10 827 aa9.43□□□□□ -0.9
CD44-208ENST00000428726 TEX35Q5T0J7 233 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms