RNA–Protein interactions for RNA: ENST00000428643.1

HMGA1P4-201, Transcript of high mobility group AT-hook 1 pseudogene 4, humanhuman

TSL 2 BASIC

Gene HMGA1P4, Length 334 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P4-201ENST00000428643 SREBF2Q12772 1141 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 PKN1Q16512 942 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 USH1GQ495M9 461 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 LARP1BQ659C4 914 aaKnown RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 WWC2Q6AWC2 1192 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 GPAT2Q6NUI2 795 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 ANKRD23Q86SG2 305 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 FBXO11Q86XK2 927 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 DNAJC5GQ8N7S2 189 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 CCDC148Q8NFR7 591 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 SMCR8Q8TEV9 937 aaPredicted RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 CAPNS2Q96L46 248 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 PARK7Q99497 189 aaKnown RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 ASCC2Q9H1I8 757 aaPredicted RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 RANBP17Q9H2T7 1088 aaKnown RBP9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 VPS54Q9P1Q0 977 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 CCPG1Q9ULG6 757 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 MYH4Q9Y623 1939 aa9.13□□□□□ -0.95
HMGA1P4-201ENST00000428643 PHIPQ8WWQ0 1821 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 LOC285556D6RIA3 1793 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 hCG_1984214I3L0E3 225 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 STXBP3O00186 592 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 PPP1R11O60927 126 aaPredicted RBP9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 FDX1P10109 184 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 TAL1P17542 331 aaPredicted RBP9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 SYT1P21579 422 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 NAPAP54920 295 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 HERVK_113P62684 666 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 TRAF1Q13077 416 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 NOGQ13253 232 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 PLS1Q14651 629 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 DEFB115Q30KQ5 88 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 PPP1R18Q6NYC8 613 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 CPXCR1Q8N123 301 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 FAM43AQ8N2R8 423 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 ZNF713Q8N859 430 aaPredicted RBP9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 CCDC12Q8WUD4 166 aaPredicted RBP9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 MTMR8Q96EF0 704 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 PAGR1Q9BTK6 254 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 AMNQ9BXJ7 453 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 SLC38A10Q9HBR0 1119 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 GJB4Q9NTQ9 266 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 BARHL2Q9NY43 387 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 HOXC10Q9NYD6 342 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 SLC45A1Q9Y2W3 748 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 PCDHA1Q9Y5I3 950 aa9.12□□□□□ -0.95
HMGA1P4-201ENST00000428643 IGF2BP3O00425 579 aaKnown RBP eCLIP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 STX6O43752 255 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 AOC2O75106 756 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 ICAM1P05362 532 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 CYP2C8P10632 490 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 CALML3P27482 149 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 ADCY7P51828 1080 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 NLRP5P59047 1200 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 HTRA3P83110 453 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 KIF23Q02241 960 aaPredicted RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 GNL2Q13823 731 aaKnown RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 SAFBQ15424 915 aaKnown RBP eCLIP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 FOXD4L5Q5VV16 416 aaPredicted RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 MCTP1Q6DN14 999 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 OTUD7BQ6GQQ9 843 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 SNRNP48Q6IEG0 339 aaKnown RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 MB21D1Q8N884 522 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 GTF3C2Q8WUA4 911 aaPredicted RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 FOXD4L4Q8WXT5 416 aaPredicted RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 COA7Q96BR5 231 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 P2RX7Q99572 595 aaKnown RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 TEX13BQ9BXU2 312 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 RAVER2Q9HCJ3 691 aaKnown RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 BRMS1Q9HCU9 246 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 SH3GLB2Q9NR46 395 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 HOMER2Q9NSB8 354 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 PNMA2Q9UL42 364 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 CIZ1Q9ULV3 898 aaPredicted RBP9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 KCNJ14Q9UNX9 436 aa9.11□□□□□ -0.95
HMGA1P4-201ENST00000428643 WDR33Q9C0J8 1336 aaKnown RBP9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 TESPA1A2RU30 521 aaPredicted RBP9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 ALAS1P13196 640 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 DDIT3P35638 169 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 OAZ1P54368 228 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 INHBEP58166 350 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 PKP1Q13835 747 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 TMEM132BQ14DG7 1078 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 TAF1CQ15572 869 aaPredicted RBP9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 KRT40Q6A162 431 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 TYW1BQ6NUM6 668 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 IFNL1Q8IU54 200 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 FAM177A1Q8N128 213 aaPredicted RBP9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 FBXO18Q8NFZ0 1043 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 AGBL1Q96MI9 1066 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 ZIC5Q96T25 663 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 PTPN18Q99952 460 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 C6orf50Q9HD87 102 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 CHMP5Q9NZZ3 219 aa9.1□□□□□ -0.95
HMGA1P4-201ENST00000428643 ZNF536O15090 1300 aa9.09□□□□□ -0.95
HMGA1P4-201ENST00000428643 ABCB11O95342 1321 aa9.09□□□□□ -0.95
HMGA1P4-201ENST00000428643 SMCO2A6NFE2 343 aa9.09□□□□□ -0.95
HMGA1P4-201ENST00000428643 MMP1P03956 469 aa9.09□□□□□ -0.95
HMGA1P4-201ENST00000428643 PDIA4P13667 645 aaKnown RBP9.09□□□□□ -0.95
HMGA1P4-201ENST00000428643 KRT2P35908 639 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms