RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 LARP1BQ659C4 914 aaKnown RBP11.64□□□□□ -0.55
CD44-207ENST00000425428 CCDC174Q6PII3 467 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 BICD2Q8TD16 824 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 CUL5Q93034 780 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 MS4A4AQ96JQ5 239 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 C8orf76Q96K31 380 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 PIGSQ96S52 555 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 BEGAINQ9BUH8 593 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 ASCC2Q9H1I8 757 aaPredicted RBP11.64□□□□□ -0.55
CD44-207ENST00000425428 JMJD4Q9H9V9 463 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 ZFYVE28Q9HCC9 887 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 FAM217BQ9NTX9 383 aaPredicted RBP11.64□□□□□ -0.55
CD44-207ENST00000425428 BTBD19C9JJ37 291 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 NLRP5P59047 1200 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 C1QTNF8P60827 252 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 TAF1CQ15572 869 aaPredicted RBP11.64□□□□□ -0.55
CD44-207ENST00000425428 NTRK3Q16288 839 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 PFKFB3Q16875 520 aaPredicted RBP11.64□□□□□ -0.55
CD44-207ENST00000425428 KIAA1755Q5JYT7 1200 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 CPXCR1Q8N123 301 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 SMARCC2Q8TAQ2 1214 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 BRI3BPQ8WY22 251 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 C6orf50Q9HD87 102 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 SH3GLB2Q9NR46 395 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 CCPG1Q9ULG6 757 aa11.64□□□□□ -0.55
CD44-207ENST00000425428 MRPL11Q9Y3B7 192 aaKnown RBP11.64□□□□□ -0.55
CD44-207ENST00000425428 WDR33Q9C0J8 1336 aaKnown RBP11.63□□□□□ -0.55
CD44-207ENST00000425428 TESPA1A2RU30 521 aaPredicted RBP11.63□□□□□ -0.55
CD44-207ENST00000425428 VWA5AO00534 786 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 HSPA6P17066 643 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 HERVK_113P62684 666 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 KIF23Q02241 960 aaPredicted RBP11.63□□□□□ -0.55
CD44-207ENST00000425428 MAPK8IP2Q13387 824 aaPredicted RBP11.63□□□□□ -0.55
CD44-207ENST00000425428 DGKZQ13574 1117 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 QRICH1Q2TAL8 776 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 TKFCQ3LXA3 575 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 GALNT17Q6IS24 598 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 PPP1R18Q6NYC8 613 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 MCF2L2Q86YR7 1114 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 RGS22Q8NE09 1264 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 PAGR1Q9BTK6 254 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 RANBP17Q9H2T7 1088 aaKnown RBP11.63□□□□□ -0.55
CD44-207ENST00000425428 SLC38A10Q9HBR0 1119 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 FBXO28Q9NVF7 368 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 PCDHA1Q9Y5I3 950 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 ABCB11O95342 1321 aa11.63□□□□□ -0.55
CD44-207ENST00000425428 PARP14Q460N5 1801 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 FAM155AB1AL88 458 aaPredicted RBP11.62□□□□□ -0.55
CD44-207ENST00000425428 JAK2O60674 1132 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 SLC25A27O95847 323 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 ICAM1P05362 532 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 TM4SF4P48230 202 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 MRPL12P52815 198 aaKnown RBP11.62□□□□□ -0.55
CD44-207ENST00000425428 NUCB2P80303 420 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 USH1GQ495M9 461 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 MCTP2Q6DN12 878 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 RASGRP2Q7LDG7 609 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 NBPF11Q86T75 865 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 IFNL1Q8IU54 200 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 TEX2Q8IWB9 1127 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 ATG4CQ96DT6 458 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 P2RX7Q99572 595 aaKnown RBP11.62□□□□□ -0.55
CD44-207ENST00000425428 TEX13BQ9BXU2 312 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 CPVLQ9H3G5 476 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 FBXO40Q9UH90 709 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 RABGAP1Q9Y3P9 1069 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 VPS37CA5D8V6 355 aaPredicted RBP11.62□□□□□ -0.55
CD44-207ENST00000425428 SPDYE16A6NNV3 312 aaPredicted RBP11.62□□□□□ -0.55
CD44-207ENST00000425428 CYTH3O43739 400 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 PPFIA3O75145 1194 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 CTDNEP1O95476 244 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 STAT3P40763 770 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 MCTP1Q6DN14 999 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 GPAT2Q6NUI2 795 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 LBX2Q6XYB7 198 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 GPRC5AQ8NFJ5 357 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 EHMT1Q9H9B1 1298 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 BARHL2Q9NY43 387 aa11.62□□□□□ -0.55
CD44-207ENST00000425428 COL11A1P12107 1806 aaPredicted RBP11.61□□□□□ -0.55
CD44-207ENST00000425428 hCG_1642624A0A1W2PR95 340 aa11.61□□□□□ -0.55
CD44-207ENST00000425428 ALAS1P13196 640 aa11.61□□□□□ -0.55
CD44-207ENST00000425428 ADCY7P51828 1080 aa11.61□□□□□ -0.55
CD44-207ENST00000425428 SNRNP48Q6IEG0 339 aaKnown RBP11.61□□□□□ -0.55
CD44-207ENST00000425428 SAMD3Q8N6K7 520 aa11.61□□□□□ -0.55
CD44-207ENST00000425428 MTMR8Q96EF0 704 aa11.61□□□□□ -0.55
CD44-207ENST00000425428 MAF1Q9H063 256 aa11.61□□□□□ -0.55
CD44-207ENST00000425428 RAVER2Q9HCJ3 691 aaKnown RBP11.61□□□□□ -0.55
CD44-207ENST00000425428 ATP6V1DQ9Y5K8 247 aa11.61□□□□□ -0.55
CD44-207ENST00000425428 SMCO2A6NFE2 343 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 ATP2A1O14983 1001 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 FOSBP53539 338 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 MAP2K1Q02750 393 aaPredicted RBP11.6□□□□□ -0.55
CD44-207ENST00000425428 FUT2Q10981 343 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 KIF22Q14807 665 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 WDR78Q5VTH9 848 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 FAM43AQ8N2R8 423 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 MPHOSPH6Q99547 160 aaKnown RBP11.6□□□□□ -0.55
CD44-207ENST00000425428 PSTPIP2Q9H939 334 aa11.6□□□□□ -0.55
CD44-207ENST00000425428 CIZ1Q9ULV3 898 aaPredicted RBP11.6□□□□□ -0.55
CD44-207ENST00000425428 IVNS1ABPQ9Y6Y0 642 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms