RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 NOVP48745 357 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 ARMCX2Q7L311 632 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 DCAF4Q8WV16 495 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 FGD4Q96M96 766 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 ABHD16BQ9H3Z7 469 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 RWDD1Q9H446 243 aaPredicted RBP13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 IL17RBQ9NRM6 502 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 RNF146Q9NTX7 359 aa13.66□□□□□ -0.22
SQSTM1-203ENST00000422245 ZNF536O15090 1300 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 CCDC171Q6TFL3 1326 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 MCM3APO60318 1980 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 POTEB2H3BUK9 544 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 NMT2O60551 498 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 DUSP11O75319 330 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 PCP11498 1178 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 CST5P28325 142 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 MFAP1P55081 439 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 TLE2Q04725 743 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 NMIQ13287 307 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 ACVR2BQ13705 512 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 CCDC96Q2M329 555 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 RCSD1Q6JBY9 416 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 KCTD1Q719H9 257 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 DEFB123Q8N688 67 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 NUP133Q8WUM0 1156 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 YTHDC1Q96MU7 727 aaKnown RBP13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 TOMM22Q9NS69 142 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 DNAH12Q6ZR08 3092 aa13.65□□□□□ -0.22
SQSTM1-203ENST00000422245 TRIM6-TRIM34B2RNG4 842 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 FGAP02671 866 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 CLTBP09497 229 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 HSPD1P10809 573 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 ACLYP53396 1101 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 ZNF589Q86UQ0 364 aaPredicted RBP13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 FAM133AQ8N9E0 248 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 KLHDC9Q8NEP7 349 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 AGBL1Q96MI9 1066 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 SPC25Q9HBM1 224 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 A1CFQ9NQ94 594 aaKnown RBP13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 INCENPQ9NQS7 918 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 STARD7Q9NQZ5 370 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 PRR12Q9ULL5 1215 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 TACC3Q9Y6A5 838 aa13.64□□□□□ -0.23
SQSTM1-203ENST00000422245 ASB14A6NK59 587 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 PQBP1O60828 265 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 TOP1P11387 765 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 ALAS1P13196 640 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 NT5C2P49902 561 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 CCDC144BQ3MJ40 725 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 RRP12Q5JTH9 1297 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 CCDC174Q6PII3 467 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 RASGRP2Q7LDG7 609 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 CHD1LQ86WJ1 897 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 CCDC144CPQ8IYA2 1237 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 PCSK9Q8NBP7 692 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 BADQ92934 168 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 RILPL2Q969X0 211 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 TOX2Q96NM4 488 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 TRERF1Q96PN7 1200 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 UPF3AQ9H1J1 476 aaKnown RBP13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 OSBPL3Q9H4L5 887 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 TCP11L1Q9NUJ3 509 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 CCPG1Q9ULG6 757 aa13.63□□□□□ -0.23
SQSTM1-203ENST00000422245 LRRC37A2A6NM11 1700 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 TRIM43BA6NCK2 446 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 ICAM1P05362 532 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 C6orf222P0C671 652 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 GJA9P57773 515 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 CNTN2Q02246 1040 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 NUCB1Q02818 461 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 FAM109BQ6ICB4 259 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 CCSAPQ6IQ19 270 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 B4GALNT3Q6L9W6 998 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 BTNL9Q6UXG8 535 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 Q7L0L9 218 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 ANKRD33Q7Z3H0 272 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 SH3RF1Q7Z6J0 888 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 TRIM43Q96BQ3 446 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 CHMP4CQ96CF2 233 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 GLT1D1Q96MS3 346 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 TMEM47Q9BQJ4 181 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 KATNBL1Q9H079 304 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 RANBP17Q9H2T7 1088 aaKnown RBP13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 RNF41Q9H4P4 317 aaPredicted RBP13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 PNMA2Q9UL42 364 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 MTMR7Q9Y216 660 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 LAMA4Q16363 1823 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 ELP1O95163 1332 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 MROH7Q68CQ1 1323 aa13.62□□□□□ -0.23
SQSTM1-203ENST00000422245 MYADML2A6NDP7 307 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 DCDC2CA8MYV0 355 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 KIAA0355O15063 1070 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 ADCY6O43306 1168 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 SDSP20132 328 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 HAND2P61296 217 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 KCNA10Q16322 511 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 AKNAD1Q5T1N1 836 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 SYDE2Q5VT97 1194 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 MFSD6Q6ZSS7 791 aa13.61□□□□□ -0.23
SQSTM1-203ENST00000422245 TBC1D10CQ8IV04 446 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms