RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 PATL2C9JE40 543 aaKnown RBP9.67□□□□□ -0.86
VIM-202ENST00000421459 TMEM232C9JQI7 657 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 RBAK-RBAKDNI3L0D1 243 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 ATP2A1O14983 1001 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 DUSP11O75319 330 aaKnown RBP9.67□□□□□ -0.86
VIM-202ENST00000421459 CSF2RAP15509 400 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 DNAJB2P25686 324 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 COPB2P35606 906 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 CDK7P50613 346 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 GNASQ5JWF2 1037 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 TMEM240Q5SV17 173 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 SLFN13Q68D06 897 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 GIMAP6Q6P9H5 292 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 ARMCX2Q7L311 632 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 CCDC144CPQ8IYA2 1237 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 NUP133Q8WUM0 1156 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 PPM1EQ8WY54 764 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 TOX2Q96NM4 488 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 KATNBL1Q9H079 304 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 PDGFCQ9NRA1 345 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 FEM1BQ9UK73 627 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 TBX21Q9UL17 535 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 PARP14Q460N5 1801 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 CHD9Q3L8U1 2897 aa9.67□□□□□ -0.86
VIM-202ENST00000421459 ZNF536O15090 1300 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 UMODL1Q5DID0 1318 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.66□□□□□ -0.86
VIM-202ENST00000421459 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.66□□□□□ -0.86
VIM-202ENST00000421459 MOXD2PA6NHM9 499 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 ARVCFO00192 962 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 NMT2O60551 498 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 TTLL1O95922 423 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 BMP3P12645 472 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 MCCP23508 829 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 CYP2C18P33260 490 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 GJA9P57773 515 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 TFAP4Q01664 338 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 CTDSPL2Q05D32 466 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 MUM1L1Q5H9M0 696 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 MFSD5Q6N075 450 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 CCDC174Q6PII3 467 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 CCDC129Q6ZRS4 1044 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 ZNF365Q70YC5 407 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 KCTD1Q719H9 257 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 MSL3Q8N5Y2 521 aaKnown RBP9.66□□□□□ -0.86
VIM-202ENST00000421459 GLT1D1Q96MS3 346 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 PBX4Q9BYU1 374 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 UPF3AQ9H1J1 476 aaKnown RBP9.66□□□□□ -0.86
VIM-202ENST00000421459 ZNF576Q9H609 170 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 DCTPP1Q9H773 170 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 MTMR7Q9Y216 660 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 SMCHD1A6NHR9 2005 aa9.66□□□□□ -0.86
VIM-202ENST00000421459 GRIN2DO15399 1336 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 ZNFX1Q9P2E3 1918 aaKnown RBP9.65□□□□□ -0.86
VIM-202ENST00000421459 FOXP2O15409 715 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 TSPY3P0CV98 308 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 TSPY8P0CW00 308 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 CST5P28325 142 aaPredicted RBP9.65□□□□□ -0.86
VIM-202ENST00000421459 IKQ13123 557 aaPredicted RBP9.65□□□□□ -0.86
VIM-202ENST00000421459 CXCL17Q6UXB2 119 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 NOL8Q76FK4 1167 aaKnown RBP9.65□□□□□ -0.86
VIM-202ENST00000421459 EEPD1Q7L9B9 569 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 ZNF467Q7Z7K2 595 aaPredicted RBP9.65□□□□□ -0.86
VIM-202ENST00000421459 FAM126BQ8IXS8 530 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 FAM133AQ8N9E0 248 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 GMCL1P1Q8NEA9 526 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 CHST13Q8NET6 341 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 NEDD1Q8NHV4 660 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 PPP1R13LQ8WUF5 828 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 TIFAQ96CG3 184 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 ABHD16BQ9H3Z7 469 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 PRDM12Q9H4Q4 367 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 A1CFQ9NQ94 594 aaKnown RBP9.65□□□□□ -0.86
VIM-202ENST00000421459 IL17RBQ9NRM6 502 aa9.65□□□□□ -0.86
VIM-202ENST00000421459 CXXC1Q9P0U4 656 aaPredicted RBP9.65□□□□□ -0.86
VIM-202ENST00000421459 REV3LO60673 3130 aa9.65□□□□□ -0.87
VIM-202ENST00000421459 GREB1LQ9C091 1923 aaPredicted RBP9.64□□□□□ -0.87
VIM-202ENST00000421459 ELP1O95163 1332 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 A0A0U1RQG5 324 aaPredicted RBP9.64□□□□□ -0.87
VIM-202ENST00000421459 DYNC1LI2O43237 492 aaPredicted RBP9.64□□□□□ -0.87
VIM-202ENST00000421459 CD4P01730 458 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 ALAS1P13196 640 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 SMPD1P17405 629 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 CCL23P55773 120 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 PSMC6P62333 389 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 TNFAIP2Q03169 654 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 PPARAQ07869 468 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 ADGRE1Q14246 886 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 CCDC85BQ15834 202 aaPredicted RBP9.64□□□□□ -0.87
VIM-202ENST00000421459 RASIP1Q5U651 963 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.64□□□□□ -0.87
VIM-202ENST00000421459 PCSK9Q8NBP7 692 aaKnown RBP9.64□□□□□ -0.87
VIM-202ENST00000421459 PI4K2BQ8TCG2 481 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 TRERF1Q96PN7 1200 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 TRPV6Q9H1D0 765 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 ACAD9Q9H845 621 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 RNF146Q9NTX7 359 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 FBXO40Q9UH90 709 aa9.64□□□□□ -0.87
VIM-202ENST00000421459 GNEQ9Y223 722 aaKnown RBP9.64□□□□□ -0.87
VIM-202ENST00000421459 PCDHB15Q9Y5E8 787 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms