RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ZNF536O15090 1300 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 SYNGAP1Q96PV0 1343 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 A0A0D9SFI3 127 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 RANBP6O60518 1105 aaKnown RBP13.73□□□□□ -0.21
USP4-204ENST00000416417 SLC1A4P43007 532 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 ACLYP53396 1101 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 PDE1AP54750 535 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 RRP12Q5JTH9 1297 aaKnown RBP13.73□□□□□ -0.21
USP4-204ENST00000416417 MAMDC4Q6UXC1 1216 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 TOMM22Q9NS69 142 aa13.73□□□□□ -0.21
USP4-204ENST00000416417 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.72□□□□□ -0.21
USP4-204ENST00000416417 CLTBP09497 229 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 ALAS1P13196 640 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 STAT2P52630 851 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 CCDC144BQ3MJ40 725 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 MUM1L1Q5H9M0 696 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 ARMCX2Q7L311 632 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 CCDC144CPQ8IYA2 1237 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 CHST13Q8NET6 341 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 STAG1Q8WVM7 1258 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 GUCD1Q96NT3 240 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 PURBQ96QR8 312 aaKnown RBP13.72□□□□□ -0.21
USP4-204ENST00000416417 LNPKQ9C0E8 428 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 RNF146Q9NTX7 359 aa13.72□□□□□ -0.21
USP4-204ENST00000416417 SOWAHBA6NEL2 793 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 POTEB2H3BUK9 544 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 DLL1O00548 723 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 C6orf222P0C671 652 aaPredicted RBP13.71□□□□□ -0.21
USP4-204ENST00000416417 SLC16A2P36021 539 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 HAND2P61296 217 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 CCDC96Q2M329 555 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 C1orf53Q5VUE5 145 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 CCSAPQ6IQ19 270 aaPredicted RBP13.71□□□□□ -0.21
USP4-204ENST00000416417 TTBK2Q6IQ55 1244 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 B4GALNT3Q6L9W6 998 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 ZNF589Q86UQ0 364 aaPredicted RBP13.71□□□□□ -0.21
USP4-204ENST00000416417 MSL3Q8N5Y2 521 aaKnown RBP13.71□□□□□ -0.21
USP4-204ENST00000416417 KLHDC9Q8NEP7 349 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 EVI5LQ96CN4 794 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 GMCL1Q96IK5 515 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 A1CFQ9NQ94 594 aaKnown RBP13.71□□□□□ -0.21
USP4-204ENST00000416417 STARD7Q9NQZ5 370 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 TMEM39AQ9NV64 488 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 FBXO40Q9UH90 709 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 STXBP5LQ9Y2K9 1186 aa13.71□□□□□ -0.21
USP4-204ENST00000416417 DUSP11O75319 330 aaKnown RBP13.7□□□□□ -0.22
USP4-204ENST00000416417 OAZ1P54368 228 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 BEX3Q00994 111 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 FAAP100Q0VG06 881 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 NMIQ13287 307 aaPredicted RBP13.7□□□□□ -0.22
USP4-204ENST00000416417 TMEM63BQ5T3F8 832 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 RCSD1Q6JBY9 416 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 ZNF467Q7Z7K2 595 aaPredicted RBP13.7□□□□□ -0.22
USP4-204ENST00000416417 FAM160B2Q86V87 743 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 CHURC1Q8WUH1 139 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 VTI1AQ96AJ9 217 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 TRERF1Q96PN7 1200 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 KATNBL1Q9H079 304 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 ACAD9Q9H845 621 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 PRR12Q9ULL5 1215 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 SYNPO2Q9UMS6 1093 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 ASTN1O14525 1302 aa13.7□□□□□ -0.22
USP4-204ENST00000416417 FRMPD2Q68DX3 1309 aaPredicted RBP13.7□□□□□ -0.22
USP4-204ENST00000416417 FGAP02671 866 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 ASGR1P07306 291 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 RAG1P15918 1043 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 NOL8Q76FK4 1167 aaKnown RBP13.69□□□□□ -0.22
USP4-204ENST00000416417 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.69□□□□□ -0.22
USP4-204ENST00000416417 EEPD1Q7L9B9 569 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 FAM133AQ8N9E0 248 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 RILPL2Q969X0 211 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 TSEN34Q9BSV6 310 aaKnown RBP13.69□□□□□ -0.22
USP4-204ENST00000416417 ABHD16BQ9H3Z7 469 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 GPCPD1Q9NPB8 672 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 HELLSQ9NRZ9 838 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 ANAPC4Q9UJX5 808 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 TRIM6-TRIM34B2RNG4 842 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 KIAA0355O15063 1070 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 HDAC1Q13547 482 aaPredicted RBP13.69□□□□□ -0.22
USP4-204ENST00000416417 MCMDC2Q4G0Z9 681 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 NSMFQ6X4W1 530 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 PDGFCQ9NRA1 345 aa13.69□□□□□ -0.22
USP4-204ENST00000416417 MCM3APO60318 1980 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 MOXD2PA6NHM9 499 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 CTAGE5O15320 804 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 ORC4O43929 436 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 HSPD1P10809 573 aaKnown RBP13.68□□□□□ -0.22
USP4-204ENST00000416417 ALX1Q15699 326 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 GNASQ5JWF2 1037 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 ZNF697Q5TEC3 545 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 ANKRD33Q7Z3H0 272 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 NUP133Q8WUM0 1156 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 TMEM47Q9BQJ4 181 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 UPF3AQ9H1J1 476 aaKnown RBP13.68□□□□□ -0.22
USP4-204ENST00000416417 CCPG1Q9ULG6 757 aa13.68□□□□□ -0.22
USP4-204ENST00000416417 DCDC2CA8MYV0 355 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 IGHDP01880 384 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 GJA9P57773 515 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 TNFAIP2Q03169 654 aa13.67□□□□□ -0.22
USP4-204ENST00000416417 FAM109BQ6ICB4 259 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms