RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 MEIS1O00470 390 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 PPP6R2O75170 966 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 ADRA2BP18089 450 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 DPH6Q7L8W6 267 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 DGKHQ86XP1 1220 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 IGDCC4Q8TDY8 1250 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 ARFGAP3Q9NP61 516 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 KIAA1024Q9UPX6 916 aa12.48□□□□□ -0.41
PTPRF-204ENST00000412568 COL5A2P05997 1499 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-204ENST00000412568 FOXN1O15353 648 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 PABPC4Q13310 644 aaKnown RBP eCLIP12.47□□□□□ -0.41
PTPRF-204ENST00000412568 SPECC1LQ69YQ0 1117 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 TAX1BP1Q86VP1 789 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CCDC17Q96LX7 622 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CARD6Q9BX69 1037 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 MRPL44Q9H9J2 332 aaKnown RBP12.47□□□□□ -0.41
PTPRF-204ENST00000412568 KANSL2Q9H9L4 492 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CTAGE9A4FU28 777 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 ECE2O60344 883 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CTDNEP1O95476 244 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 RPN1P04843 607 aaKnown RBP12.47□□□□□ -0.41
PTPRF-204ENST00000412568 ELF2Q15723 593 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 ZBTB12Q9Y330 459 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CTAGE15A4D2H0 777 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L15C9J2P7 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L13C9JLJ4 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L11C9JVI0 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L18D6R9N7 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L22D6RA61 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L17D6RBQ6 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L19D6RCP7 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L20D6RJB6 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CTAGE8P0CG41 777 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L24Q0WX57 530 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 ALX1Q15699 326 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 USP17L6PQ6QN14 398 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CTAGE6Q86UF2 777 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 CTAGE4Q8IX94 777 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 AMNQ9BXJ7 453 aa12.47□□□□□ -0.41
PTPRF-204ENST00000412568 PP2D1A8MPX8 630 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 TMEM110-MUSTN1A8MSY1 372 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 CETN3O15182 167 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 ARHGAP6O43182 974 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 TUBB4AP04350 444 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 FDPSP14324 419 aaKnown RBP12.46□□□□□ -0.41
PTPRF-204ENST00000412568 ERO1AQ96HE7 468 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 MROH7-TTC4A0A0A0MT08 1334 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 GOLGA6L10A6NI86 522 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 KRT86O43790 486 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 AKR1B1P15121 316 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 PTPROQ16827 1216 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 CCDC93Q567U6 631 aa12.46□□□□□ -0.41
PTPRF-204ENST00000412568 GPATCH4Q5T3I0 446 aaKnown RBP12.46□□□□□ -0.41
PTPRF-204ENST00000412568 ABCC12Q96J65 1359 aa12.46□□□□□ -0.42
PTPRF-204ENST00000412568 ZBED4O75132 1171 aa12.46□□□□□ -0.42
PTPRF-204ENST00000412568 GJC1P36383 396 aa12.46□□□□□ -0.42
PTPRF-204ENST00000412568 EVCP57679 992 aa12.46□□□□□ -0.42
PTPRF-204ENST00000412568 MORC3Q14149 939 aa12.46□□□□□ -0.42
PTPRF-204ENST00000412568 RC3H1Q5TC82 1133 aaKnown RBP12.46□□□□□ -0.42
PTPRF-204ENST00000412568 TMC4Q7Z404 712 aa12.46□□□□□ -0.42
PTPRF-204ENST00000412568 SRBD1Q8N5C6 995 aaKnown RBP12.46□□□□□ -0.42
PTPRF-204ENST00000412568 KCNJ18B7U540 433 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 WDHD1O75717 1129 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-204ENST00000412568 KCNJ12Q14500 433 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 ALDH8A1Q9H2A2 487 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-204ENST00000412568 TMEM260Q9NX78 707 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 MAN1B1Q9UKM7 699 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 CCPG1Q9ULG6 757 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 UTP18Q9Y5J1 556 aaKnown RBP eCLIP12.45□□□□□ -0.42
PTPRF-204ENST00000412568 ERLIN2O94905 339 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 POTEJP0CG39 1038 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 BMP3P12645 472 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 ASPRV1Q53RT3 343 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 SLC27A3Q5K4L6 730 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 DEFB132Q7Z7B7 95 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 ZNF215Q9UL58 517 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-204ENST00000412568 TNFAIP1Q13829 316 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 PLA2G4DQ86XP0 818 aa12.45□□□□□ -0.42
PTPRF-204ENST00000412568 PSDA5PKW4 1024 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 SMIM22K7EJ46 135 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 SLFN14P0C7P3 912 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 C12orf60Q5U649 245 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 SGMS1Q86VZ5 419 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 GLT8D2Q9H1C3 349 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 MYO6Q9UM54 1294 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 SRPRBQ9Y5M8 271 aaKnown RBP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 USP17L10C9JJH3 530 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 GCOM1H8Y6P7 765 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 GTPBP6O43824 516 aaPredicted RBP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 POLR2MP0CAP2 368 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 KRT83P78385 493 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 USP49Q70CQ1 688 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 ADGRA1Q86SQ6 560 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 IPO4Q8TEX9 1081 aaKnown RBP12.44□□□□□ -0.42
PTPRF-204ENST00000412568 TBC1D5Q92609 795 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 GJA10Q969M2 543 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 CCDC113Q9H0I3 377 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 PLEKHA4Q9H4M7 779 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 REREQ9P2R6 1566 aa12.44□□□□□ -0.42
PTPRF-204ENST00000412568 PNPLA7Q6ZV29 1317 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms