RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 FAM46AQ96IP4 442 aaKnown RBP8.68□□□□□ -1.02
USP40-202ENST00000409945 DEPDC7Q96QD5 511 aa8.68□□□□□ -1.02
USP40-202ENST00000409945 SRPK1Q96SB4 655 aaKnown RBP8.68□□□□□ -1.02
USP40-202ENST00000409945 CNTNAP4Q9C0A0 1308 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 TNFRSF10CO14798 259 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 TNNI3KQ59H18 835 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 NBPF6Q5VWK0 638 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 ANKRD34AQ69YU3 496 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 ZNF746Q6NUN9 644 aaPredicted RBP8.67□□□□□ -1.02
USP40-202ENST00000409945 HID1Q8IV36 788 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 KLHL6Q8WZ60 621 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 NBPF4Q96M43 638 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 PXDNQ92626 1479 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 SBNO1A3KN83 1393 aa8.67□□□□□ -1.02
USP40-202ENST00000409945 C9IYK1 514 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 ADGRE1Q14246 886 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 TDRD10Q5VZ19 366 aaKnown RBP8.66□□□□□ -1.02
USP40-202ENST00000409945 ARMCX6Q7L4S7 300 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 SHISA5Q8N114 240 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 PPP1R13LQ8WUF5 828 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 ZNF512BQ96KM6 892 aaPredicted RBP8.66□□□□□ -1.02
USP40-202ENST00000409945 SPATA31A3Q5VYP0 1347 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 RGPD8O14715 1765 aaPredicted RBP8.66□□□□□ -1.02
USP40-202ENST00000409945 TNS3Q68CZ2 1445 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 CDK5R2Q13319 367 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 OR6P1Q8NGX9 317 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 PIDD1Q9HB75 910 aa8.66□□□□□ -1.02
USP40-202ENST00000409945 QRICH2Q9H0J4 1663 aa8.65□□□□□ -1.02
USP40-202ENST00000409945 RAG1P15918 1043 aa8.65□□□□□ -1.02
USP40-202ENST00000409945 SPATC1Q76KD6 591 aa8.65□□□□□ -1.02
USP40-202ENST00000409945 DZIP1LQ8IYY4 767 aaKnown RBP8.65□□□□□ -1.02
USP40-202ENST00000409945 C19orf47Q8N9M1 422 aaKnown RBP8.65□□□□□ -1.02
USP40-202ENST00000409945 ZNF507Q8TCN5 953 aa8.65□□□□□ -1.02
USP40-202ENST00000409945 PSMG3-AS1Q96PY0 264 aa8.65□□□□□ -1.02
USP40-202ENST00000409945 LGR4Q9BXB1 951 aa8.65□□□□□ -1.02
USP40-202ENST00000409945 AFF2P51816 1311 aa8.65□□□□□ -1.02
USP40-202ENST00000409945 COL22A1Q8NFW1 1626 aaPredicted RBP8.65□□□□□ -1.03
USP40-202ENST00000409945 RALGAPBQ86X10 1494 aa8.65□□□□□ -1.03
USP40-202ENST00000409945 DDAH1O94760 285 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 LRRFIP1Q32MZ4 808 aaKnown RBP8.64□□□□□ -1.03
USP40-202ENST00000409945 ZNF662Q6ZS27 426 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 CD163Q86VB7 1156 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.64□□□□□ -1.03
USP40-202ENST00000409945 PHACTR4Q8IZ21 702 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 LILRB2Q8N423 598 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 SLC6A18Q96N87 628 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 SIRPGQ9P1W8 387 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 LRP6O75581 1613 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 RXRBP28702 533 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.64□□□□□ -1.03
USP40-202ENST00000409945 DNAJC7Q99615 494 aa8.64□□□□□ -1.03
USP40-202ENST00000409945 R3HCC1Q9Y3T6 440 aaKnown RBP8.64□□□□□ -1.03
USP40-202ENST00000409945 ATP7BP35670 1465 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 DIAPH1O60610 1272 aaKnown RBP8.63□□□□□ -1.03
USP40-202ENST00000409945 SLITRK5O94991 958 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 BMP3P12645 472 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 NBPF8Q3BBV2 869 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 DIEXFQ68CQ4 756 aaKnown RBP8.63□□□□□ -1.03
USP40-202ENST00000409945 SEZ6L2Q6UXD5 910 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 FAM178BQ8IXR5 827 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 TAB3Q8N5C8 712 aaPredicted RBP8.63□□□□□ -1.03
USP40-202ENST00000409945 SSU72Q9NP77 194 aaKnown RBP8.63□□□□□ -1.03
USP40-202ENST00000409945 BRD4O60885 1362 aaPredicted RBP8.63□□□□□ -1.03
USP40-202ENST00000409945 PPIP5K1Q6PFW1 1433 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 USP32Q8NFA0 1604 aa8.63□□□□□ -1.03
USP40-202ENST00000409945 CST3P01034 146 aaPredicted RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 ITGB2P05107 769 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 ZEB1P37275 1124 aaPredicted RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 GSK3AP49840 483 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 SOGA3Q5TF21 947 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 INTS3Q68E01 1043 aaKnown RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 SLC6A19Q695T7 634 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 VHLLQ6RSH7 139 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 SCARF2Q96GP6 870 aaPredicted RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 C1GALT1Q9NS00 363 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 TRPC5Q9UL62 973 aaPredicted RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 ACEP12821 1306 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 RGS13O14921 159 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 U2SURPO15042 1029 aaKnown RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 YARSP54577 528 aaKnown RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 CDC37L1Q7L3B6 337 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 NOP9Q86U38 636 aaKnown RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 DNAJB8Q8NHS0 232 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 RNPC3Q96LT9 517 aaKnown RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 MYRFLQ96LU7 910 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 RGS17Q9UGC6 210 aaPredicted RBP8.62□□□□□ -1.03
USP40-202ENST00000409945 PFDN2Q9UHV9 154 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 SBNO2Q9Y2G9 1366 aa8.62□□□□□ -1.03
USP40-202ENST00000409945 POLR3AO14802 1390 aaPredicted RBP8.61□□□□□ -1.03
USP40-202ENST00000409945 PIK3R2O00459 728 aa8.61□□□□□ -1.03
USP40-202ENST00000409945 GAS2O43903 313 aaKnown RBP8.61□□□□□ -1.03
USP40-202ENST00000409945 LEFTY1O75610 366 aa8.61□□□□□ -1.03
USP40-202ENST00000409945 TP53P04637 393 aaPredicted RBP8.61□□□□□ -1.03
USP40-202ENST00000409945 USP11P51784 963 aa8.61□□□□□ -1.03
USP40-202ENST00000409945 RBM6P78332 1123 aaKnown RBP8.61□□□□□ -1.03
USP40-202ENST00000409945 INSM1Q01101 510 aaPredicted RBP8.61□□□□□ -1.03
USP40-202ENST00000409945 FXNQ16595 210 aa8.61□□□□□ -1.03
USP40-202ENST00000409945 CYB5D2Q8WUJ1 264 aa8.61□□□□□ -1.03
USP40-202ENST00000409945 UTP4Q969X6 686 aaKnown RBP8.61□□□□□ -1.03
USP40-202ENST00000409945 SSBP4Q9BWG4 385 aaPredicted RBP8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms