RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 ZBTB18Q99592 522 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 PRG4Q92954 1404 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-210ENST00000409694 IGBP1P78318 339 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 ZNF174Q15697 407 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 ADPGKQ9BRR6 497 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 LRRC2Q9BYS8 371 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 TRIM33Q9UPN9 1127 aa8.58□□□□□ -1.04
SYNE1-210ENST00000409694 F8W031 263 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ATP5HO75947 161 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 BFSP1Q12934 665 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 PPP2R5AQ15172 486 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 GNPTABQ3T906 1256 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 KRT39Q6A163 491 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 LSM14BQ9BX40 385 aaKnown RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 CARD6Q9BX69 1037 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 KIF21AQ7Z4S6 1674 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ACTN1P12814 892 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 AOC3Q16853 763 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 C10orf76Q5T2E6 689 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 PIP4K2CQ8TBX8 421 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 TRIM8Q9BZR9 551 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ANLNQ9NQW6 1124 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 PAMP19021 973 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 TYW1BQ6NUM6 668 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 C4orf50Q6ZRC1 276 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 PCF11O94913 1555 aaKnown RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ATP8B1O43520 1251 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 XPOTO43592 962 aaKnown RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 DCTN3O75935 186 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 FBXW4P57775 412 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 EPAS1Q99814 870 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 NDE1Q9NXR1 346 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ZNF644Q9H582 1327 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 KCNK3O14649 394 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ZRANB2O95218 330 aaKnown RBP eCLIP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 IFNB1P01574 187 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 RPS6KB1P23443 525 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 PDE1BQ01064 536 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ANGEL1Q9UNK9 670 aaKnown RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 KRT87PA6NCN2 255 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 MCF2LO15068 1137 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 GSNP06396 782 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 SRGAP2CP0DJJ0 459 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 GUCY2FP51841 1108 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 RCN2Q14257 317 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 C2CD5Q86YS7 1000 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 TEX9Q8N6V9 391 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 OLFM3Q96PB7 478 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 MBIPQ9NS73 344 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 DONSONQ9NYP3 566 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 APOA1P02647 267 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 DEPTORQ8TB45 409 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 SNX29Q8TEQ0 813 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 FAM193BQ96PV7 902 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 USP26Q9BXU7 913 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 DNAJC17Q9NVM6 304 aaKnown RBP8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ZBBXA8MT70 800 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 NDUFAF2Q8N183 169 aa8.57□□□□□ -1.04
SYNE1-210ENST00000409694 ABCC5O15440 1437 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 GOLGA8RI6L899 631 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 MEIS1O00470 390 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 TAC1P20366 129 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 TSC22D3Q99576 134 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 ZNF202O95125 648 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 NAF1Q96HR8 494 aaKnown RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 UBN1Q9NPG3 1134 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 SMYD2Q9NRG4 433 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 HERC4Q5GLZ8 1057 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 TTC19Q6DKK2 380 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 KSR2Q6VAB6 950 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 DTNBP1Q96EV8 351 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 INTS9Q9NV88 658 aaKnown RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 ZSCAN32Q9NX65 697 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 MPP6Q9NZW5 540 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 PIK3AP1Q6ZUJ8 805 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 NR1H4Q96RI1 486 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 METTL14Q9HCE5 456 aaKnown RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 ZNF189O75820 626 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 ATP2B4P23634 1241 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 RRAGAQ7L523 313 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 KRT26Q7Z3Y9 468 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 DBNLQ9UJU6 430 aaKnown RBP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 PIK3CAP42336 1068 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 C16orf72Q14CZ0 275 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 ANKRD44Q8N8A2 993 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 MRFAP1L1Q96HT8 127 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 CHPF2Q9P2E5 772 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 PSMD7P51665 324 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 PLIN2Q99541 437 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 LMCD1Q9NZU5 365 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 SNX5Q9Y5X3 404 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 CCDC151A5D8V7 595 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 PYGMP11217 842 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 HSPA6P17066 643 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 MSH2P43246 934 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 YWHAGP61981 247 aaKnown RBP eCLIP8.56□□□□□ -1.04
SYNE1-210ENST00000409694 ATP8B2P98198 1209 aa8.56□□□□□ -1.04
SYNE1-210ENST00000409694 WDR64B1ANS9 1081 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 KCNJ18B7U540 433 aa8.55□□□□□ -1.04
SYNE1-210ENST00000409694 SGK1O00141 431 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms