RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 BEGAINQ9BUH8 593 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 MLXIPQ9HAP2 919 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 SENP2Q9HC62 589 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 KIAA1468Q9P260 1216 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 RCOR1Q9UKL0 485 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 NFE2L3Q9Y4A8 694 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 ZBTB5O15062 677 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 ZSCAN12O43309 604 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 SSR1P43307 286 aaKnown RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 RCAN1P53805 252 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 PTPN14Q15678 1187 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 PFKFB3Q16875 520 aaPredicted RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 CCDC84Q86UT8 332 aaPredicted RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 OTUD5Q96G74 571 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 LMNB1P20700 586 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 ZNF445P59923 1031 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 CCDC181Q5TID7 509 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 RCSD1Q6JBY9 416 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 NELFCDQ8IXH7 590 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 SLFN12Q8IYM2 578 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 CSGALNACT2Q8N6G5 542 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 AGBL3Q8NEM8 1001 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 CBX8Q9HC52 389 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 PUF60Q9UHX1 559 aaKnown RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 ABT1Q9ULW3 272 aaKnown RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L15C9J2P7 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L13C9JLJ4 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L11C9JVI0 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L18D6R9N7 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L22D6RA61 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L17D6RBQ6 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L19D6RCP7 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L20D6RJB6 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 GRIN3BO60391 1043 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 EIF2AK2P19525 551 aaKnown RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 RPL13P26373 211 aaKnown RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 CCNA1P78396 465 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 HDLBPQ00341 1268 aaKnown RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L24Q0WX57 530 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 DCAF17Q5H9S7 520 aaPredicted RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 LRCH2Q5VUJ6 765 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 USP17L6PQ6QN14 398 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 MYCT1Q8N699 235 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 GOLGA6L1Q8N7Z2 621 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 TTC12Q9H892 705 aaPredicted RBP10.18□□□□□ -0.78
LIG4-202ENST00000405925 PODXL2Q9NZ53 605 aa10.18□□□□□ -0.78
LIG4-202ENST00000405925 STK36Q9NRP7 1315 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 A0A1W2PQ27 194 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 A0A1W2PQ64 194 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 A0A1W2PQD8 194 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 IL1R1P14778 569 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 DNA2P51530 1060 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 SMTNP53814 917 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 UBXN1Q04323 297 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 PAK1Q13153 545 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 QRICH1Q2TAL8 776 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 KRBA2Q6ZNG9 492 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 C16orf86Q6ZW13 317 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 GPBP1Q86WP2 473 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 OXER1Q8TDS5 423 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 ZFP91Q96JP5 570 aaPredicted RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 DEFB129Q9H1M3 183 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 SYNRGQ9UMZ2 1314 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 KDM3AQ9Y4C1 1321 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 POTEB2H3BUK9 544 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 OSBPP22059 807 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 LONP1P36776 959 aaKnown RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 NLRP12P59046 1061 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 TTBK2Q6IQ55 1244 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 IFT74Q96LB3 600 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 C16orf45Q96MC5 204 aaPredicted RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 TEKT3Q9BXF9 490 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 RTFDC1Q9BY42 306 aaPredicted RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 ANO3Q9BYT9 981 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 VPS16Q9H269 839 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 STK24Q9Y6E0 443 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 GCFC2P16383 781 aaKnown RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 RPS12P25398 132 aaKnown RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 PPP1R2P41236 205 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 ARID5AQ03989 594 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 EEPD1Q7L9B9 569 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 DPP9Q86TI2 863 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 SRBD1Q8N5C6 995 aaKnown RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 C2orf69Q8N8R5 385 aa10.17□□□□□ -0.78
LIG4-202ENST00000405925 ALDH8A1Q9H2A2 487 aaPredicted RBP10.17□□□□□ -0.78
LIG4-202ENST00000405925 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP10.17□□□□□ -0.78
LIG4-202ENST00000405925 ABCC6O95255 1503 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 PPP6R2O75170 966 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 PTGS1P23219 599 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 GUCY1A2P33402 732 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 SLF1Q9BQI6 1058 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 RAVER2Q9HCJ3 691 aaKnown RBP10.16□□□□□ -0.78
LIG4-202ENST00000405925 SLC5A4Q9NY91 659 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 GCNT3O95395 438 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 NDUFB10O96000 172 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 HMGCS2P54868 508 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 NCBP1Q09161 790 aaKnown RBP10.16□□□□□ -0.78
LIG4-202ENST00000405925 ZDHHC15Q96MV8 337 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 TMX1Q9H3N1 280 aa10.16□□□□□ -0.78
LIG4-202ENST00000405925 NOD1Q9Y239 953 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms