RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 VAT1LQ9HCJ6 419 aa34.09■■■■□ 3.05
USP42-202ENST00000404008 STK3Q13188 491 aa34.08■■■■□ 3.05
USP42-202ENST00000404008 PLS1Q14651 629 aa34.08■■■■□ 3.05
USP42-202ENST00000404008 CCDC174Q6PII3 467 aa34.08■■■■□ 3.05
USP42-202ENST00000404008 CPXCR1Q8N123 301 aa34.08■■■■□ 3.05
USP42-202ENST00000404008 TEX13BQ9BXU2 312 aa34.08■■■■□ 3.05
USP42-202ENST00000404008 NCOA5Q9HCD5 579 aaKnown RBP34.08■■■■□ 3.05
USP42-202ENST00000404008 RAVER2Q9HCJ3 691 aaKnown RBP34.08■■■■□ 3.05
USP42-202ENST00000404008 LIMCH1Q9UPQ0 1083 aa34.08■■■■□ 3.05
USP42-202ENST00000404008 PFKFB2O60825 505 aa34.07■■■■□ 3.04
USP42-202ENST00000404008 FKTNO75072 461 aa34.07■■■■□ 3.04
USP42-202ENST00000404008 STAT3P40763 770 aa34.07■■■■□ 3.04
USP42-202ENST00000404008 CTCFP49711 727 aaPredicted RBP34.07■■■■□ 3.04
USP42-202ENST00000404008 LACTBP83111 547 aaPredicted RBP34.07■■■■□ 3.04
USP42-202ENST00000404008 CDC37Q16543 378 aaPredicted RBP34.07■■■■□ 3.04
USP42-202ENST00000404008 ME3Q16798 604 aa34.07■■■■□ 3.04
USP42-202ENST00000404008 MOV10L1Q9BXT6 1211 aaKnown RBP34.07■■■■□ 3.04
USP42-202ENST00000404008 LARGE1O95461 756 aa34.06■■■■□ 3.04
USP42-202ENST00000404008 CCNA1P78396 465 aa34.06■■■■□ 3.04
USP42-202ENST00000404008 FUT2Q10981 343 aa34.06■■■■□ 3.04
USP42-202ENST00000404008 SLKQ9H2G2 1235 aaPredicted RBP34.06■■■■□ 3.04
USP42-202ENST00000404008 SMCHD1A6NHR9 2005 aa34.06■■■■□ 3.04
USP42-202ENST00000404008 ICAM1P05362 532 aa34.05■■■■□ 3.04
USP42-202ENST00000404008 SNRNP48Q6IEG0 339 aaKnown RBP34.05■■■■□ 3.04
USP42-202ENST00000404008 RIOX2Q8IUF8 465 aa34.05■■■■□ 3.04
USP42-202ENST00000404008 CCDC82Q8N4S0 544 aa34.05■■■■□ 3.04
USP42-202ENST00000404008 CNTNAP5Q8WYK1 1306 aa34.05■■■■□ 3.04
USP42-202ENST00000404008 PORCNQ9H237 461 aa34.05■■■■□ 3.04
USP42-202ENST00000404008 CD2BP2O95400 341 aaKnown RBP34.04■■■■□ 3.04
USP42-202ENST00000404008 SCRN1Q12765 414 aa34.04■■■■□ 3.04
USP42-202ENST00000404008 QRICH1Q2TAL8 776 aa34.04■■■■□ 3.04
USP42-202ENST00000404008 AGBL1Q96MI9 1066 aa34.04■■■■□ 3.04
USP42-202ENST00000404008 PIGSQ96S52 555 aa34.04■■■■□ 3.04
USP42-202ENST00000404008 CASP8AP2Q9UKL3 1982 aa34.04■■■■□ 3.04
USP42-202ENST00000404008 ZBTB5O15062 677 aa34.03■■■■□ 3.04
USP42-202ENST00000404008 NTRK3Q16288 839 aa34.03■■■■□ 3.04
USP42-202ENST00000404008 HOMER1Q86YM7 354 aa34.03■■■■□ 3.04
USP42-202ENST00000404008 SHCBP1Q8NEM2 672 aa34.03■■■■□ 3.04
USP42-202ENST00000404008 PLXNB2O15031 1838 aa34.03■■■■□ 3.04
USP42-202ENST00000404008 SLC25A27O95847 323 aa34.02■■■■□ 3.04
USP42-202ENST00000404008 CTGFP29279 349 aa34.02■■■■□ 3.04
USP42-202ENST00000404008 LBX1P52954 281 aa34.02■■■■□ 3.04
USP42-202ENST00000404008 CD99L2Q8TCZ2 262 aa34.02■■■■□ 3.04
USP42-202ENST00000404008 RRP36Q96EU6 259 aaKnown RBP34.02■■■■□ 3.04
USP42-202ENST00000404008 CCPG1Q9ULG6 757 aa34.02■■■■□ 3.04
USP42-202ENST00000404008 RIPK3Q9Y572 518 aa34.02■■■■□ 3.04
USP42-202ENST00000404008 GTF3C6Q969F1 213 aa34.01■■■■□ 3.04
USP42-202ENST00000404008 ERO1AQ96HE7 468 aa34.01■■■■□ 3.04
USP42-202ENST00000404008 ARHGAP39Q9C0H5 1083 aa34.01■■■■□ 3.04
USP42-202ENST00000404008 EFCC1Q9HA90 598 aa34.01■■■■□ 3.04
USP42-202ENST00000404008 PNMA2Q9UL42 364 aa34.01■■■■□ 3.04
USP42-202ENST00000404008 PNMA6FA0A0J9YX94 578 aa34■■■■□ 3.03
USP42-202ENST00000404008 ERCC3P19447 782 aa34■■■■□ 3.03
USP42-202ENST00000404008 MAPK4P31152 587 aa34■■■■□ 3.03
USP42-202ENST00000404008 COPB2P35606 906 aa34■■■■□ 3.03
USP42-202ENST00000404008 CAP1Q01518 475 aa34■■■■□ 3.03
USP42-202ENST00000404008 KIF22Q14807 665 aa34■■■■□ 3.03
USP42-202ENST00000404008 NECAB1Q8N987 351 aa34■■■■□ 3.03
USP42-202ENST00000404008 PIBF1Q8WXW3 757 aa34■■■■□ 3.03
USP42-202ENST00000404008 ZSCAN31Q96LW9 406 aaPredicted RBP34■■■■□ 3.03
USP42-202ENST00000404008 MROH8Q9H579 483 aa34■■■■□ 3.03
USP42-202ENST00000404008 PPP1R11O60927 126 aaPredicted RBP33.99■■■■□ 3.03
USP42-202ENST00000404008 IFNAR1P17181 557 aa33.99■■■■□ 3.03
USP42-202ENST00000404008 MCM2P49736 904 aa33.99■■■■□ 3.03
USP42-202ENST00000404008 NCAPG2Q86XI2 1143 aa33.99■■■■□ 3.03
USP42-202ENST00000404008 CCAR1Q8IX12 1150 aaKnown RBP33.99■■■■□ 3.03
USP42-202ENST00000404008 TRIM47Q96LD4 638 aa33.99■■■■□ 3.03
USP42-202ENST00000404008 RBBP6Q7Z6E9 1792 aaKnown RBP33.99■■■■□ 3.03
USP42-202ENST00000404008 ECM2O94769 699 aaPredicted RBP33.98■■■■□ 3.03
USP42-202ENST00000404008 TAL1P17542 331 aaPredicted RBP33.98■■■■□ 3.03
USP42-202ENST00000404008 PSMC4P43686 418 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 SLC4A3P48751 1232 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 FCGRTP55899 365 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 FBXO11Q86XK2 927 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 SEC63Q9UGP8 760 aaKnown RBP33.98■■■■□ 3.03
USP42-202ENST00000404008 CPLX1O14810 134 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 ALAS1P13196 640 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 TKFCQ3LXA3 575 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 AMNQ9BXJ7 453 aa33.98■■■■□ 3.03
USP42-202ENST00000404008 SH2B1Q9NRF2 756 aaPredicted RBP33.98■■■■□ 3.03
USP42-202ENST00000404008 DOCK3Q8IZD9 2030 aa33.97■■■■□ 3.03
USP42-202ENST00000404008 hCG_1642624A0A1W2PR95 340 aa33.97■■■■□ 3.03
USP42-202ENST00000404008 USH1GQ495M9 461 aa33.97■■■■□ 3.03
USP42-202ENST00000404008 GPR142Q7Z601 462 aa33.97■■■■□ 3.03
USP42-202ENST00000404008 PHKBQ93100 1093 aa33.97■■■■□ 3.03
USP42-202ENST00000404008 HOMER2Q9NSB8 354 aa33.97■■■■□ 3.03
USP42-202ENST00000404008 ZNF236Q9UL36 1845 aa33.97■■■■□ 3.03
USP42-202ENST00000404008 TNPO2O14787 897 aaKnown RBP33.96■■■■□ 3.03
USP42-202ENST00000404008 FMNL1O95466 1100 aaPredicted RBP33.96■■■■□ 3.03
USP42-202ENST00000404008 ST3GAL1Q11201 340 aa33.96■■■■□ 3.03
USP42-202ENST00000404008 WDR78Q5VTH9 848 aa33.96■■■■□ 3.03
USP42-202ENST00000404008 CPLX2Q6PUV4 134 aaKnown RBP33.96■■■■□ 3.03
USP42-202ENST00000404008 CHST13Q8NET6 341 aa33.96■■■■□ 3.03
USP42-202ENST00000404008 TRERF1Q96PN7 1200 aa33.96■■■■□ 3.03
USP42-202ENST00000404008 RNF146Q9NTX7 359 aa33.96■■■■□ 3.03
USP42-202ENST00000404008 V9GY48 417 aaPredicted RBP33.96■■■■□ 3.03
USP42-202ENST00000404008 ZNFX1Q9P2E3 1918 aaKnown RBP33.95■■■■□ 3.03
USP42-202ENST00000404008 PLEKHH3Q7Z736 793 aa33.95■■■■□ 3.02
USP42-202ENST00000404008 ABCB11O95342 1321 aa33.94■■■■□ 3.02
USP42-202ENST00000404008 PRPF3O43395 683 aaKnown RBP33.94■■■■□ 3.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms