RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 CASC4Q6P4E1 433 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 GSDMAQ96QA5 445 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 Q9H521 79 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 KIAA0556O60303 1618 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 ZFXP17010 805 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 LONP1P36776 959 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 CUL4AQ13619 759 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 SLC39A14Q15043 492 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 CCDC125Q86Z20 511 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 MAPKAPK5Q8IW41 473 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 PHLPP2Q6ZVD8 1323 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 PPP6R2O75170 966 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 MYCLP12524 364 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 SCG2P13521 617 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 PDE6AP16499 860 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 FAM47AQ5JRC9 791 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 PLEKHA4Q9H4M7 779 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 TFCP2L1Q9NZI6 479 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 TMOD4Q9NZQ9 345 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 PCDHA5Q9Y5H7 936 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 USP17L12C9JPN9 530 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 USP17L21D6R901 530 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 SF3A3Q12874 501 aaKnown RBP eCLIP11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 CTAGE3PQ8IX95 158 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 CCDC13Q8IYE1 715 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 BBOF1Q8ND07 529 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 CCDC87Q9NVE4 849 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 TNKSO95271 1327 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 DDX39AO00148 427 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 BUB1O43683 1085 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 NEK8Q86SG6 692 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 PALM2Q8IXS6 379 aa11.24□□□□□ -0.61
LIMCH1-203ENST00000396595 DDAH1O94760 285 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 DNAJC10Q8IXB1 793 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 KRT12Q99456 494 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 DPH5Q9H2P9 285 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 BIN2Q9UBW5 565 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 CLIC4Q9Y696 253 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 ABCC2Q92887 1545 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 KDM5DQ9BY66 1539 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 MED23Q9ULK4 1368 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 CFBP00751 764 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 GFAPP14136 432 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 RSAD2Q8WXG1 361 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 HAUS1Q96CS2 278 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 CLIC6Q96NY7 704 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 PALMDQ9NP74 551 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 RAB20Q9NX57 234 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 GAS7O60861 476 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 IFNB1P01574 187 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 FGAP02671 866 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 PCP11498 1178 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 CA8P35219 290 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 ADCY8P40145 1251 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 POLR2FP61218 127 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 SCRN1Q12765 414 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 SLC35F6Q8N357 371 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 N4BP2L2Q92802 583 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 RUNDC3BQ96NL0 473 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 PICK1Q9NRD5 415 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 POLR3EQ9NVU0 708 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 FAM26FQ5R3K3 315 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 TPH2Q8IWU9 490 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 TRMT2AQ8IZ69 625 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 TGFBRAP1Q8WUH2 860 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 HVCN1Q96D96 273 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 CUEDC2Q9H467 287 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 PCDHA12Q9UN75 941 aa11.23□□□□□ -0.61
LIMCH1-203ENST00000396595 NOP56O00567 594 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 TNNI1P19237 187 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 USH1GQ495M9 461 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PPP4R1Q8TF05 950 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 JRKLQ9Y4A0 524 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 NUB1Q9Y5A7 615 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 ZBED4O75132 1171 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 TECP42680 631 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 CYP2J2P51589 502 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 CTSWP56202 376 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 RETREG2Q8NC44 543 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 TEKT1Q969V4 418 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 NRBP1Q9UHY1 535 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 TRPC6Q9Y210 931 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 BZW2Q9Y6E2 419 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 ERBB4Q15303 1308 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 THAP12O43422 761 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 EEF1GP26641 437 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 CCT5P48643 541 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PHEXP78562 749 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 GUCY2DQ02846 1103 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PPP2R5DQ14738 602 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PNMA1Q8ND90 353 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 SYMPKQ92797 1274 aaKnown RBP11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PANK4Q9NVE7 773 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PLEKHG3A1L390 1219 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 CASP14P31944 242 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 TRAPPC10P48553 1259 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 PCYT1AP49585 367 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 SLC12A2P55011 1212 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 POLE2P56282 527 aa11.22□□□□□ -0.61
LIMCH1-203ENST00000396595 SLFN12Q8IYM2 578 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms