RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 CDC25BP30305 580 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 CCT6AP40227 531 aaKnown RBP12.59□□□□□ -0.39
TCOF1-203ENST00000394269 ADKP55263 362 aaKnown RBP12.59□□□□□ -0.39
TCOF1-203ENST00000394269 ARMCX5Q6P1M9 558 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 MIGA2Q7L4E1 593 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 NEK8Q86SG6 692 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 CSRNP1Q96S65 589 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 ZMYND12Q9H0C1 365 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 PI4KBQ9UBF8 816 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 FAM198AQ9UFP1 575 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 GDAQ9Y2T3 454 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 SUGT1Q9Y2Z0 365 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L15C9J2P7 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L13C9JLJ4 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L11C9JVI0 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L18D6R9N7 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L22D6RA61 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L17D6RBQ6 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L19D6RCP7 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L20D6RJB6 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 ADCY7P51828 1080 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L24Q0WX57 530 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 USP17L6PQ6QN14 398 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 POTEDQ86YR6 584 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 TMX1Q9H3N1 280 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 DNAJC18Q9H819 358 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 JMJD4Q9H9V9 463 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 CCDC88AQ3V6T2 1871 aa12.59□□□□□ -0.39
TCOF1-203ENST00000394269 NRDCO43847 1150 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 TDP2O95551 362 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 SARSP49591 514 aaKnown RBP12.58□□□□□ -0.4
TCOF1-203ENST00000394269 ZDHHC15Q96MV8 337 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 MTRQ99707 1265 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 A0A1B0GUL6 1792 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 CBFA2T2O43439 604 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 GH2P01242 217 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 SSBP05455 408 aaKnown RBP eCLIP12.58□□□□□ -0.4
TCOF1-203ENST00000394269 ICA1Q05084 483 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 SLFN13Q68D06 897 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 KRT25Q7Z3Z0 450 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 MED15Q96RN5 788 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 SWAP70Q9UH65 585 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 CASZ1Q86V15 1759 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 YDJCA8MPS7 323 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 ERCC3P19447 782 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 LONP1P36776 959 aaKnown RBP12.58□□□□□ -0.4
TCOF1-203ENST00000394269 GSDMDP57764 484 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 ZNF543Q08ER8 600 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 DPYDQ12882 1025 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 SH3BP5LQ7L8J4 393 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 OGFOD1Q8N543 542 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 C4orf32Q8N8J7 132 aa12.58□□□□□ -0.4
TCOF1-203ENST00000394269 ZNF526Q8TF50 670 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-203ENST00000394269 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.58□□□□□ -0.4
TCOF1-203ENST00000394269 OR52Z1P0C646 297 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 ASPRV1Q53RT3 343 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 STYK1Q6J9G0 422 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 CABP7Q86V35 215 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 TTLL6Q8N841 843 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 SPTLC3Q9NUV7 552 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 PTPN14Q15678 1187 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 ABCB5Q2M3G0 1257 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 VPS16Q9H269 839 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 PSTPIP2Q9H939 334 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 DISC1Q9NRI5 854 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 PCDHA1Q9Y5I3 950 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 SYNRGQ9UMZ2 1314 aa12.57□□□□□ -0.4
TCOF1-203ENST00000394269 TEX33O43247 280 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 RPN1P04843 607 aaKnown RBP12.56□□□□□ -0.4
TCOF1-203ENST00000394269 DPEP1P16444 411 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 CCZ1BP86790 482 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 CCZ1P86791 482 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-203ENST00000394269 HPS3Q969F9 1004 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 CDK5RAP3Q96JB5 506 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 GSDMAQ96QA5 445 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 CAMKK2Q96RR4 588 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 TMOD2Q9NZR1 351 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 MYH15Q9Y2K3 1946 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 POTEMA6NI47 508 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 PLCG1P19174 1290 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 CALCRLQ16602 461 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 ARL6IP4Q66PJ3 421 aaKnown RBP12.56□□□□□ -0.4
TCOF1-203ENST00000394269 DYMQ7RTS9 669 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 CCDC84Q86UT8 332 aaPredicted RBP12.56□□□□□ -0.4
TCOF1-203ENST00000394269 ENOX1Q8TC92 643 aaKnown RBP12.56□□□□□ -0.4
TCOF1-203ENST00000394269 RIOX1Q9H6W3 641 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 MYH6P13533 1939 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 TRIM49BA6NDI0 452 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 RIOK3O14730 519 aaKnown RBP12.56□□□□□ -0.4
TCOF1-203ENST00000394269 TPM2P07951 284 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 IDEP14735 1019 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 GALNT17Q6IS24 598 aa12.56□□□□□ -0.4
TCOF1-203ENST00000394269 PNMA6FA0A0J9YX94 578 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 F5H6K3 240 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 M0R2N6 131 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 PSMD14O00487 310 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 SLC37A4O43826 429 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 PPP1R11O60927 126 aaPredicted RBP12.55□□□□□ -0.4
TCOF1-203ENST00000394269 IGSF3O75054 1194 aa12.55□□□□□ -0.4
TCOF1-203ENST00000394269 ASIC1P78348 528 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms