RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 BLIDQ8IZY5 108 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 METTL14Q9HCE5 456 aaKnown RBP14□□□□□ -0.17
CCDC88C-204ENST00000389857 SERTAD1Q9UHV2 236 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 PTPREP23469 700 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 THEGQ9P2T0 379 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 PCDHA12Q9UN75 941 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 ORC6Q9Y5N6 252 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 TLR3O15455 904 aaKnown RBP14□□□□□ -0.17
CCDC88C-204ENST00000389857 ZNF445P59923 1031 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 BFSP1Q12934 665 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 PASKQ96RG2 1323 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 ZNF449Q6P9G9 518 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 BBS5Q8N3I7 341 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 RNF169Q8NCN4 708 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 ARMCX3Q9UH62 379 aaPredicted RBP14□□□□□ -0.17
CCDC88C-204ENST00000389857 LUC7L3O95232 432 aaKnown RBP14□□□□□ -0.17
CCDC88C-204ENST00000389857 PPIP5K2O43314 1243 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 TMEM191BP0C7N4 346 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 TECP42680 631 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 AOC3Q16853 763 aa14□□□□□ -0.17
CCDC88C-204ENST00000389857 RNF8O76064 485 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 POLGP54098 1239 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 EAPPQ56P03 285 aaPredicted RBP13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ADALQ6DHV7 355 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 TRMT44Q8IYL2 757 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 EPS15L1Q9UBC2 864 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 FAM47AQ5JRC9 791 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 IFT122Q9HBG6 1241 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ZAP70P43403 619 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 FAM178BQ8IXR5 827 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 LRRC8CQ8TDW0 803 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 EDC4Q6P2E9 1401 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 XPOTO43592 962 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 SERPINB6P35237 376 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ADKP55263 362 aaKnown RBP13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 TFDP1Q14186 410 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ZNF654Q8IZM8 581 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 PAGR1Q9BTK6 254 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ZMYM6O95789 1325 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 SLC8A1P32418 973 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ANKRD20A4Q4UJ75 823 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ANKRD20A8PQ5CZ79 823 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ANKRD20A2Q5SQ80 823 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 ANKRD20A1Q5TYW2 823 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 MAP7D3Q8IWC1 876 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 NLRP7Q8WX94 980 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 SPZ1Q9BXG8 430 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 COL4A3BPQ9Y5P4 624 aa13.99□□□□□ -0.17
CCDC88C-204ENST00000389857 GNGT1P63211 74 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 OTUD7BQ6GQQ9 843 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 TRIML1Q8N9V2 468 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 RPS6KC1Q96S38 1066 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 NRBP2Q9NSY0 501 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 LARSQ9P2J5 1176 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 ZMYM4Q5VZL5 1548 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 PDCD2Q16342 344 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 GADL1Q6ZQY3 521 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 SPDL1Q96EA4 605 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 PHACTR3Q96KR7 559 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 ANGPTL3Q9Y5C1 460 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 SPECC1L-ADORA2AF8WAN1 911 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 ZNF274Q96GC6 653 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 NBPF3Q9H094 633 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 HSPA8P11142 646 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 PHEXP78562 749 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 IFRD2Q12894 506 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 ARMCX5Q6P1M9 558 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 SAT1P21673 171 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 RAPH1Q70E73 1250 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 RNF168Q8IYW5 571 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 SUCLG2Q96I99 432 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 FRMPD2Q68DX3 1309 aaPredicted RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 OR52Z1P0C646 297 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 CTSWP56202 376 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 BPIFB4P59827 614 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 PPARDQ03181 441 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 TMTC4Q5T4D3 741 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 TRIM68Q6AZZ1 485 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 GPIHBP1Q8IV16 184 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 TRIM11Q96F44 468 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 TTC1Q99614 292 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 XPO4Q9C0E2 1151 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 BZW2Q9Y6E2 419 aaKnown RBP13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 UGGT2Q9NYU1 1516 aa13.98□□□□□ -0.17
CCDC88C-204ENST00000389857 SART1O43290 800 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 HEXIM1O94992 359 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 TCP1P17987 556 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 ASPHQ12797 758 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 MAGEF1Q9HAY2 307 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 TNNQ9UQP3 1299 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 EVI5O60447 810 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 XPAP23025 273 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 KAZNQ674X7 775 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 NEK8Q86SG6 692 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 TRIM42Q8IWZ5 723 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 KDM5AP29375 1690 aaKnown RBP13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 APBA1Q02410 837 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 G2E3Q7L622 706 aa13.97□□□□□ -0.17
CCDC88C-204ENST00000389857 NOSTRINQ8IVI9 506 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms