RNA–Protein interactions for RNA: ENST00000374949.2

HLA-DQA1-202, Transcript of major histocompatibility complex, class II, DQ alpha 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQA1, Length 1,060 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1-202ENST00000374949 CDX2Q99626 313 aaPredicted RBP12.81□□□□□ -0.36
HLA-DQA1-202ENST00000374949 CNNM2Q9H8M5 875 aa12.81□□□□□ -0.36
HLA-DQA1-202ENST00000374949 HOXC10Q9NYD6 342 aa12.81□□□□□ -0.36
HLA-DQA1-202ENST00000374949 LIMCH1Q9UPQ0 1083 aa12.81□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TTC28Q96AY4 2481 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SMCHD1A6NHR9 2005 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 USP17L12C9JPN9 530 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 USP17L21D6R901 530 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 HSP90AA1P07900 732 aaKnown RBP12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 DSG3P32926 999 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 MCM5P33992 734 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 ICA1Q05084 483 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 AMOTL1Q8IY63 956 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 MB21D1Q8N884 522 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SPRYD3Q8NCJ5 442 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TMX3Q96JJ7 454 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 MAML3Q96JK9 1138 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 KRT23Q9C075 422 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 RNF41Q9H4P4 317 aaPredicted RBP12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 MROH8Q9H579 483 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 ARPP21Q9UBL0 812 aaPredicted RBP12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 VCANP13611 3396 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 EYSQ5T1H1 3165 aa12.8□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TRIM43BA6NCK2 446 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SMIM22K7EJ46 135 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SLC3A2P08195 630 aaKnown RBP12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 FGD1P98174 961 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 Q6ZUG5 572 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 NOL8Q76FK4 1167 aaKnown RBP12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SIAH1Q8IUQ4 282 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TBC1D10CQ8IV04 446 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 MAFAQ8NHW3 353 aaPredicted RBP12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 STAG1Q8WVM7 1258 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 MYLIPQ8WY64 445 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TRIM43Q96BQ3 446 aaPredicted RBP12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 LENG1Q96BZ8 264 aaPredicted RBP12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TTYH1Q9H313 450 aaPredicted RBP12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 ARHGEF10LQ9HCE6 1279 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 XPNPEP3Q9NQH7 507 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SLC5A4Q9NY91 659 aa12.79□□□□□ -0.36
HLA-DQA1-202ENST00000374949 CYP2D7A0A087X1C5 515 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 PGK2P07205 417 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 PCP11498 1178 aaKnown RBP12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 FCER1AP12319 257 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TLE2Q04725 743 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 COL9A3Q14050 684 aaPredicted RBP12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TOB2Q14106 344 aaPredicted RBP12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TMEM132BQ14DG7 1078 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 C12orf60Q5U649 245 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 MB21D2Q8IYB1 491 aaPredicted RBP12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 ABRAQ8N0Z2 381 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 FBXL16Q8N461 479 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SH2D4AQ9H788 454 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 VCPKMTQ9H867 229 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SWAP70Q9UH65 585 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 PHF24Q9UPV7 400 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 TMX2Q9Y320 296 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 WDR19Q8NEZ3 1342 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 ROBO3Q96MS0 1386 aa12.78□□□□□ -0.36
HLA-DQA1-202ENST00000374949 SPTBN5Q9NRC6 3674 aaKnown RBP12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 WDR46O15213 610 aaKnown RBP12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 PRC1O43663 620 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 PGK1P00558 417 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 TAL1P17542 331 aaPredicted RBP12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 ITGB8P26012 769 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 EPHB4P54760 987 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 CUL4AQ13619 759 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 TCEANC2Q96MN5 208 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 MMP19Q99542 508 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 LARP6Q9BRS8 491 aaKnown RBP12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 SEMA6BQ9H3T3 888 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 INCENPQ9NQS7 918 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 SH2B1Q9NRF2 756 aaPredicted RBP12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 TOMM22Q9NS69 142 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 FBXO28Q9NVF7 368 aa12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 GREB1LQ9C091 1923 aaPredicted RBP12.77□□□□□ -0.37
HLA-DQA1-202ENST00000374949 B4E1Z4 1266 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 RAD21O60216 631 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 PQBP1O60828 265 aaKnown RBP12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 CLTBP09497 229 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 FGRP09769 529 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 RARBP10826 455 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 FOSL2P15408 326 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 SMAD3P84022 425 aaKnown RBP12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 PDE4BQ07343 736 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 RRP12Q5JTH9 1297 aaKnown RBP12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 CHST3Q7LGC8 479 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 STK11IPQ8N1F8 1099 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 ESR2Q92731 530 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 INTS4Q96HW7 963 aaKnown RBP12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 RNPC3Q96LT9 517 aaKnown RBP12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 LRRC2Q9BYS8 371 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 AGXT2Q9BYV1 514 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 ZSWIM5Q9P217 1185 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 TPCN1Q9ULQ1 816 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 TACC3Q9Y6A5 838 aa12.76□□□□□ -0.37
HLA-DQA1-202ENST00000374949 A0A1W2PQ45 241 aaPredicted RBP12.75□□□□□ -0.37
HLA-DQA1-202ENST00000374949 A0A1W2PQY0 241 aa12.75□□□□□ -0.37
HLA-DQA1-202ENST00000374949 KDM4AO75164 1064 aa12.75□□□□□ -0.37
HLA-DQA1-202ENST00000374949 SLC25A27O95847 323 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms