RNA–Protein interactions for RNA: ENST00000374943.8

HLA-DQB1-201, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

BASIC

Gene HLA-DQB1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-201ENST00000374943 ATP2B2Q01814 1243 aa20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 ICA1Q05084 483 aa20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 SEPT2Q15019 361 aa20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 CCDC96Q2M329 555 aa20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 REXO1Q8N1G1 1221 aaKnown RBP20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 PDILTQ8N807 584 aa20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 GMCL1P1Q8NEA9 526 aa20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 CSRNP1Q96S65 589 aa20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.47■□□□□ 0.87
HLA-DQB1-201ENST00000374943 CNTNAP1P78357 1384 aa20.46■□□□□ 0.87
HLA-DQB1-201ENST00000374943 SIAH1Q8IUQ4 282 aa20.46■□□□□ 0.87
HLA-DQB1-201ENST00000374943 ATAD5Q96QE3 1844 aa20.46■□□□□ 0.87
HLA-DQB1-201ENST00000374943 PRR29P0C7W0 189 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 MMP14P50281 582 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 ADCY7P51828 1080 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 NCAPHQ15003 741 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 E2F4Q16254 413 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SHROOM1Q2M3G4 852 aaPredicted RBP20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TTBK2Q6IQ55 1244 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SMARCE1Q969G3 411 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 DHX58Q96C10 678 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 ZBED3Q96IU2 234 aaPredicted RBP20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TAOK3Q9H2K8 898 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 MAN1B1Q9UKM7 699 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 ZBTB5O15062 677 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TPM4P67936 248 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 RBM26Q5T8P6 1007 aaKnown RBP20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SLFN13Q68D06 897 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 NEK8Q86SG6 692 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 GMCL1Q96IK5 515 aa20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 ZBTB12Q9Y330 459 aaPredicted RBP20.45■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SMC2O95347 1197 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 GDF11O95390 407 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CXCL9Q07325 125 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 MORC3Q14149 939 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 DTHD1Q6ZMT9 781 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 KCTD1Q719H9 257 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 FAM83AQ86UY5 434 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 IQUBQ8NA54 791 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 COA7Q96BR5 231 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TMEM60Q9H2L4 133 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 RIC8AQ9NPQ8 531 aa20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 ATF5Q9Y2D1 282 aaPredicted RBP20.44■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TCP10L2B9ZVM9 353 aa20.43■□□□□ 0.86
HLA-DQB1-201ENST00000374943 PPP1R11O60927 126 aaPredicted RBP20.43■□□□□ 0.86
HLA-DQB1-201ENST00000374943 BMP6P22004 513 aa20.43■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TXLNAP40222 546 aa20.43■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SLC1A4P43007 532 aa20.43■□□□□ 0.86
HLA-DQB1-201ENST00000374943 PAGE5Q96GU1 130 aa20.43■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CLRN2A0PK11 232 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 USP17L10C9JJH3 530 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 MYO1BO43795 1136 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 PTGER2P43116 358 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 MYL5Q02045 173 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CIAPIN1Q6FI81 312 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 MLKLQ8NB16 471 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 DACH1Q9UI36 760 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TBC1D12O60347 775 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 GH2P01242 217 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 OR52Z1P0C646 297 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CLK2P49760 499 aaKnown RBP20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 RRP1BQ14684 758 aaKnown RBP20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CT47A1Q5JQC4 288 aaPredicted RBP20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 ISM2Q6H9L7 571 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 PDXDC2PQ6P474 469 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 GRAMD1CQ8IYS0 662 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SPC24Q8NBT2 197 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TBCKQ8TEA7 893 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 GLT8D2Q9H1C3 349 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 BIN2Q9UBW5 565 aaPredicted RBP20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CD2APQ9Y5K6 639 aa20.42■□□□□ 0.86
HLA-DQB1-201ENST00000374943 LTBP3Q9NS15 1303 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 F5H6K3 240 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 NEMFO60524 1076 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SLC16A2P36021 539 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 JAG1P78504 1218 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 KLRC3Q07444 240 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 DPYDQ12882 1025 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 JAKMIP3Q5VZ66 844 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 AK8Q96MA6 479 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 SGIP1Q9BQI5 828 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CCSER1Q9C0I3 900 aa20.41■□□□□ 0.86
HLA-DQB1-201ENST00000374943 NFKBIEO00221 500 aa20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CCNT1O60563 726 aaKnown RBP20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 NDUFB10O96000 172 aa20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 LETM2Q2VYF4 491 aa20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 JDP2Q8WYK2 163 aa20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 CUL5Q93034 780 aa20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 GSDMAQ96QA5 445 aa20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TMEM260Q9NX78 707 aa20.4■□□□□ 0.86
HLA-DQB1-201ENST00000374943 MRPL12P52815 198 aaKnown RBP20.39■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TNIP1Q15025 636 aa20.39■□□□□ 0.86
HLA-DQB1-201ENST00000374943 QRICH1Q2TAL8 776 aa20.39■□□□□ 0.86
HLA-DQB1-201ENST00000374943 HSD3B7Q9H2F3 369 aa20.39■□□□□ 0.86
HLA-DQB1-201ENST00000374943 TTC12Q9H892 705 aaPredicted RBP20.39■□□□□ 0.86
HLA-DQB1-201ENST00000374943 RPS12P25398 132 aaKnown RBP20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 BTNL9Q6UXG8 535 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 DRC7Q8IY82 874 aa20.38■□□□□ 0.85
HLA-DQB1-201ENST00000374943 DISC1Q9NRI5 854 aa20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms